GgaINT1002649 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNN4]
Coordinates
chr8:20776143-20776743:+
Coord C1 exon
chr8:20776143-20776267
Coord A exon
chr8:20776268-20776591
Coord C2 exon
chr8:20776592-20776743
Length
324 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ATCCCATCCCTTCTTTCCAGGCA
3' ss Score
9.46
Exon sequences
Seq C1 exon
GATAAGTGGGAAAAGCTGATCACAAATGGGAAATCGGTGGAGCTCTTTGAGCACGTCAGCTTGATGACTCTCGACAGCATCATGAAATGTGCCTTCAGCTACCACAGCAACTGCCAGACCGACAG
Seq A exon
GTCAGTGTCCAATCCCTGGCTGAAAGTTTGCAGCTCAGAGAGAAAGCAGGCAAACTGCTTGTCAAAACACACCCGAATTTAGGCTTTGACGTAAATAAACCTGACTCAAACTGCAGGGTCTGTTGGGCAAGCACTTCCTCAGTAGTAATGCAGCAGCCTGCTAACAGAAGGCTTACAGAGTACTTCCTGATGCCATTATCCCTTAATACTTGGTTAGTCACTACGGATGAACCCCAGTGAGGCTGGGGACAGAGCAGACTCCAGGCTGGTACATAATGCCCTCCCAGCATATGCAGCAGTGTGAATCCCATCCCTTCTTTCCAG
Seq C2 exon
GCAAAACACCTACATCCAGGCTGTCTATGACCTGTGCCGCATGGTGCACGAGCGACTCCGCATCTTCCCCTACCACAATGACTTCATTTACTGGCTCAGCCCCCATGGATACCAGTTCAGGAAGGTTTGCCAGCTTGCTCACGACCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688:ENSGALT00000017050:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.0=100)
A:
NA
C2:
PF0006717=p450=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAAAGCTGATCACAAATGGG
R:
CTGTGTGGTCGTGAGCAAGC
Band lengths:
270-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]