BtaINT0007899 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHD5]
Coordinates
chr7:8516058-8516860:+
Coord C1 exon
chr7:8516058-8516179
Coord A exon
chr7:8516180-8516589
Coord C2 exon
chr7:8516590-8516860
Length
410 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TTCTTGCTCTCATCCTGTAGGAA
3' ss Score
10.91
Exon sequences
Seq C1 exon
GCCAAGTGGCAGCGTCTGATCATAGAGGGCCACACCCATCTGGACATGTTTGAACACATCAGCCTCATGACCCTGGACAGTCTGCAGAAATGCGTCTTCAGTTACGACAGCAATTGCCAAGA
Seq A exon
GTGAGTCTTACCCAAGGGCCTGGGGAACATGAGCCACAGACCCACGGGAGTAGATGGGTGAGGGAGGGTTGACCAGGACAATCAGAAAGGTCTTCTTGGAAGAGGTGGGTCAGATCTGGACATTGAAGAACAAGAAGGGGAACGAGAAGAAGCCATCCTTTTAGGTGGGTAGAACTGTTTGATAAAGACCAGGAGGCTAGGAGGAGCACGGTATGTGCAATAGTGAGGCGACATCTTGGAGATAAGGATGGAGGCATTGGTATCTTTATATCTTAAGAACATTCTGAAACCAAAGAGGATATGAACTTTCTCCTGGGCTTTCCAGAGAGCCATGGAAGGTGTTTGAGAAGAAGAGGGTTCTGTTCAAAGTTTATTTCAGACATCAGATATTTCTTGCTCTCATCCTGTAG
Seq C2 exon
GAAGCCCAGTGACTATATCGCTGCCATCTTGGAGCTCAGTGCCCTTGTGGCAAAACGATATCAACAGATCTTCCTGCACATGGACTTCCTGTACTACCTCACCCCTGATGGGTGGCGCTTCCGCAGGGCCTGCCGCCTAGTGCACGACTTCACAGGTGCTGTCATCCAGGAGCGGCGCCGCACCCTCCCCAAGGAAGATATTGATGACTTCCTCAAGGCCAAGGAGAAGACCAAGACTTTGGACTTTATTGATGTACTCCTGCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039319:ENSBTAT00000036382:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.6=100)
A:
NA
C2:
PF0006717=p450=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGGCAGCGTCTGATCAT
R:
TCCTTGGCCTTGAGGAAGTCA
Band lengths:
345-755
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]