BtaINT0005479 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035042]
Coordinates
chr7:8561798-8562159:+
Coord C1 exon
chr7:8561798-8561864
Coord A exon
chr7:8561865-8562029
Coord C2 exon
chr7:8562030-8562159
Length
165 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCTTTCTGAATGCTTCTCAGGCC
3' ss Score
7.56
Exon sequences
Seq C1 exon
GATGAAGATGGGAAGGGATTGTCAGATGAAGATATCCGAGCTGAAGCTGACACCTTCATGTTTGAAG
Seq A exon
GTGAGGGTCCCAGTGTAGGACTACAGGAGGAGAAAGAACTTGCTGAATGGACCCTGGGCCACCCTATCCCTCCCTATCCTCTCCATGGGCCTTAATTCGAGGGAGCTGTCCATGCTCTGGTGCTGAAGTAGCCCAGAGACCCAAGCCTTTCTGAATGCTTCTCAG
Seq C2 exon
GCCATGATACCACAGCCAGTGGTCTCTCCTGGATTCTGTACAATCTTGCCAAGCACAAAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCAAGAGCTCCTGAAGGATCGTGAGCCTAAAAACATTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025748:ENSBTAT00000036366:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
NA
C2:
PF0006717=p450=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGATGGGAAGGGATTGTCA
R:
TCAATGTTTTTAGGCTCACGATCCT
Band lengths:
194-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]