MmuINT0045391 @ mm10
Intron Retention
Gene
ENSMUSG00000073424 | Cyp4f15
Description
cytochrome P450, family 4, subfamily f, polypeptide 15 [Source:MGI Symbol;Acc:MGI:2146921]
Coordinates
chr17:32699931-32700334:+
Coord C1 exon
chr17:32699931-32699997
Coord A exon
chr17:32699998-32700204
Coord C2 exon
chr17:32700205-32700334
Length
207 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TCCACCTATCTGCCCCACAGGCC
3' ss Score
10.41
Exon sequences
Seq C1 exon
GATGAAGATGGAAAGGAGCTGTCAGATGAGGACATTAGAGCAGAGGCTGACACCTTCATGTTTGAGG
Seq A exon
GTGAGGCTCCCAGTATGGGACTACAGAGTGAACAGAAAACCTTCATTCTGGGCACATATTGAATGGACCCTATTCATTCAACTATCATCCCCCTATCATCCATTGTCCCCTTTCCCCATCTTTCCTGGGCTTCTCCCTGCCTGGCTGCTACCCACTTTGTGGTGCTGAAGTAGCTTTGAGACCTAAGTCCACCTATCTGCCCCACAG
Seq C2 exon
GCCATGACACCACAGCCAGCGGGCTCTCCTGGATCCTGTACAATCTGGCAAGGCACCCAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCAGGAGCTGCTGAGGGATCGAGAGTCTACAGAAATTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073424:ENSMUST00000168171:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
NA
C2:
PF0006717=p450=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGATGGAAAGGAGCTGTCA
R:
ACTCAATTTCTGTAGACTCTCGATCC
Band lengths:
196-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types