BtaINT0005498 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BJM8]
Coordinates
chr6:85410241-85414111:-
Coord C1 exon
chr6:85413969-85414111
Coord A exon
chr6:85411797-85413968
Coord C2 exon
chr6:85410241-85411796
Length
2172 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
TTTTTCTTCCGACTTGCCAGGGT
3' ss Score
6.36
Exon sequences
Seq C1 exon
GTCCCTTTCCCAATACTCTGAGAGAAGTTGAAGTAGAGATCATAAGTAATGATATATGTAATCAAATTCATGTATATGGTGGAGCTGTATCATCAGGAATGATATGTGCTGGATTCTTGAAAGGAAAACTAGATGCCTGTGAA
Seq A exon
GTAAGAATATATTCACATCTACAAAATGAATCTGTTACTAGAGATGACTTGACTGAACATAGACTAATGTCACTTTATGTGACTCTATGAAATTAAATTTGTGGAGGAGAGAGAATAGCAGAGTATACAGAGTTACATTAAAACAGATAACCAACAAGGACATACCATATAGCACAGGGGATTCTGCTCAATATTCTGTAATAATCTAAATGGGAAAAGAATTTGAAAAACCATAGATACATGTATATGCATAACTGAATCACTTTCTTGTACATCTGAAGTTAACACAACATTGTTAATCAACTATACTCCTATATAAAATTGAAATTTAAAAAACTTGAATAAAATTTTAAAAAACAGGCATGATTAGAAATTTTTTAAAAAAGTTACAGGGACCAAAAGAGCAATAAGAAATCGTCCTCGTTTCCTATTGTCTAGTGCTGTGCTTAGTCGCTCAGTCGTGTCCAACTCTTTGCAACCCTGAGGACTGTAACCCGCCAGGCTCTTCTGTCTGTGGGGATTCTCAAGGCTAGAACACTGGAGTGGGTTGCTGTGCCCTCCTCCAGGGGATCTTCCCAATGCAGGCATTGAACCCAGGTCTCGCGCATTGCAGGTGGATTCTTTACCATTTGAGCCACCAGGGAAGCCCAGAGCCATGTGTAAAGAATAATCACCAGCTGCAAACTGGTGGGCTCTGATTAAAGAAAAGCACTTCTTGTAGAAGAGAGATATATAATCATTGCTTCAAGCCATAGTCAGACTCTGTAGTTAGGTATCTTATCCCTCTAATTGCAAGGCGCTGTGGCCTGGGACCTGCAGATGTCTCCACAGCCAGTAGAGCATCATCCCACCAGTGCTTGAACCTTTGAACTTAAACAGTGTACATCACATAGAATTATACTACTTAAGTGAGAAATATCTATATATTCATTTTAAAGTGTTATCTCACAAATCATGTACTAATTAAATAAATTACATTTCCCTCAATCTTACAGAGCATTAATTTTAATCATTAAGCATTTAAAGAAAACACATTGTAAAGTATGGCTATTTCAAGGACTGAAAATAAATAATTAAACCTTCTGCCTATAGCATTTGAAACTGAATCCAACGGTTTAGCGATTCTATGTTTGAAATAGATTCAGCTCCACAAAAAAAGGAATCTGTTGAATAGAGACTTGTATCTGAGTTTATTTCGTAAGAGAGCAGATGTTCTCATTCTGTTGGTTCATGCTCCCTTGCTTCCTTCACCTCTTGTATACTAAGAACCTAAATTAGGATTTAGGACTTTGGGAAAGAAGATCAGGATGATTGCTTTTGGTACACCAGCAGGATTGCTTTTGGTAGACCAGAGTTCTTACTCTCTGTCCACTGGGCATGAGAGCGTACTAAGAAGTATGTGATGGGAAGAGAGTTTAAAGGCACAAGACTCTAAGAACCCTGCCTACTTCAAACAGAATCAGCTCTCTTTTTTAAAAGAAACATCTGGAAGGAGTTTCCACATAATATTTCTTTTACATGAATAAACTCATTGCTAAAAGATAAAATTAAAAATCATTTGTGAAAGGGTTAAATACATCAGGGAAGCCTTCTTGATTCCTACACTCAAACCAGTTCACTTGGGAGCAAAACTCTGTGTGTAATCAATGATGCACATTTATTTGGAATGTCCTTTGCCTATCTTTCTCCTCTCAAACCTATTGCTACACAGTGATACAGTGCCTCAGACACTTTCCTATCAACTGGTGGAGCAAGGTGGGGATTCAGATTCAAAGCATGAGATTATTCCTACCTAACAGATTTAGGAGAGGCTTCATGGCAGAAGTGACACTTGAGGTCACGTTTATGTAAGAAACTGATGGTTAGACCTAGGTTCAACTTGTGCTGTCTGCTGAGACCAAGCAAAACTAAAAACTATACAAGGATAAAACTGAAACCTCAACTTTAGTCACACTACCTTCCAGAAAGAGACATTAATAGAGATAAACAGAGATAATCAGGTAACAGATAATAAGAACCTCAACTATTAAATTAATGGTGAGTAAAACAGAACTTGTCTTTCATATTTCAACTTAAAATGTTATTTATTAGACATTCAGATTCTGATTAACTTGTATTTCTGACACCCCTTTATTTATCACATTGATCTTTTTTTTTCTTCCGACTTGCCAG
Seq C2 exon
GGTGATTCTGGAGGACCTCTGGTTATACCACGTGATGGAAACATCTGGTATCTTATCGGAATAGTAAGCTGGGGAATGGACTGTGGGAAAGAAAACAAGCCTGGAGTCTATACCAAAGTGACTCGTTATCGGGACTGGATTAAGTCTAAAACTGACATCTAATGTAATAATCACCTCTACATCCAAAATGTAAATGCCATGTGTGGCCTCTGGCAATATCATGTGCTGCTATGTATATTGTCAAGATGCAAATAAGCCTGTTCTGACAACTCTCCTCTAACATGTGAGGAAAGAAGGCTTTCTTTCACATCACCTGAAGTGTCTCACTGACCATAGTGTTAACTCCAGTAAGATCTGCCATTGCTGCTAAGTGTCTCTGATTGCCTCCTGGCTCATCTTTTGGTTTCTACTACACACTTTCCATTTTAGAAAAATCCAGCAGTTTAATCAGATGAGTACCAGCTGGCTAAGTATTCCTTATTTTTTTCCTGCACAGCATACTGCCCTTCCCTGACTTCATAGTTTTTAGCTTCCTCCTCAAATAATCCTCATTCAGGATCTGTAGATTCACTGCACCAGACAAATCCAGGTGATTCATTTTGGCTGACATTAATGCAAACGATGAAGAGGCATTAGACATGAAACCAGGACTCAAGAGATGGCACTGCAAGAGTCCTTTCCCCTTTGCCCTCAGATGTTCATTTAACCTCTTTCTGAAACTTGAAAAATCTTGACATTTAAATTTACACCCAACAATGCACATTTTAAACTCTTTAAACAACTACAATAATGTTCACTTTAGAACAATGAATAAATCTTTGGATCAGATAGTAGGAGAACTGGAAATATTGCCAAGGACAGGATTTGTTTCAAACTATGTAAAAATGACTTTTGATATTCAGGAAATAAAAGCAGTTCCTTGGCCTTTTCGTCAGGTGGGGAATGAGAAGAGGCAAGGACTTAGTGAGAGAAGTTACTTTCCAGCTCTAAAAAATGGAAAATGTTCTGGTTCTGGTGTAACTGTACTTTTTACTTCTGTTTAATTACTTACTAATGTAGTTTATTTCTTAAACCATTTTATTTTCAACTTCAGAACACTTAAGGGACCCACAGAATGAGATGCCAGTGTAAATTATACATTCATAAATATATGAGAAATCAACAGAAAATTAGAAATTCATTTAGTTTGATATGAGTTTGGGAATGACTTTATTGTATAATATTTAAATTTACTTTTACAAATGGTAGTCATTCTTTGCAGAATTGTATTTATAAAGAATATTCAAATAAGAAAGCATCTTTGGAATGGTTTAGTAATGATATAGTCATTTTATATATATTTAAATGCATATTTTGTGGCACTGTACATGACTAGTGTTCAGCAAAACTCAAACTTTTCTTGTGCATCTGAACTTTATTTGGCTCCCCCTCCTGTTACAATTAATTTAGTTGATGAAATAACTGCCACGTGAAGACATTTTGAGTTTTATATCAAGTAAGAGTCTTTCTTCTCCCACATAATATTATATTGTAAATTAAAATGTATTTATAATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025920:ENSBTAT00000036722:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.4=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]