BtaINT0005725 @ bosTau6
Intron Retention
Description
LOC526787 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q1LZH3]
Coordinates
chr19:56998552-56999544:-
Coord C1 exon
chr19:56999502-56999544
Coord A exon
chr19:56999220-56999501
Coord C2 exon
chr19:56998552-56999219
Length
282 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
GCTTTGCCCCGTCTTCCCAGGGC
3' ss Score
8.89
Exon sequences
Seq C1 exon
GGCAGCAAGCCTTTGGCTCTCCTTGACATGCAGAGAGTTTCAC
Seq A exon
GTAAGTACTTGTGTGCTGACCTTTCTCCCAAAGGGCCAGGGAAGTGGCTCGTTTCCCTTGTCGCCGTGTGACTTCTTCCTGCCTATCTACCTTCTTGTCCAAGATTTGTTCCAGGAATTCGGGCAGGGACAAAAACACAAGCCTCAGTTTATGCCCCTGTGTGGGTACAGTCCCAGTACCCCGTGGGCAGACCAGCTGTTTCCAACAGAAGAAAAGGGGTCCCCCTCAAAGGCCCCTCAACTCCCGCCCTGGCTTCAACCTGGCTTTGCCCCGTCTTCCCAG
Seq C2 exon
GGCCAGTCCAGGACCAAGCCCCAGCCCTGCAGCCCACTGCCAAGCTCTCAGGAGCTCCCCAAGGCCAGTTCCTGATGAATGACAGCAGTCTCTGCACGCTGGAGGACCAAGTCCTCTGTCCCGTTTGCCTGGAGGTGTTCCGCAACCCAGTCACCACCGCCTGCGGGCACAACTTCTGCATGAGCTGCCTCCAGGGTTTCTGGGACTACCAGGCCACCATGGGCGAGCCACTCTACTGCCCCCAGTGCCGGGAGAGCTTCCCCACGCGGCCTCGCCTCTGCAAGAACGTCATCCTGGAGGAGATGGTGACATGCTTCACCCAGGCCAAGGGCCAGACCTTGGGGTCCTCACGGAGCCTGGCCGGGCCCAGGGACGTGCCCTGCGACTTCTGTGCCCCTGAGAAGCTCAAGTCCGTCAAGTCGTGCCTGCAGTGCATGGCCTCCCTGTGCGAGAAGCACCTGCGCAGCCACTTAGAGGACCAGGTGTTCCACGGGCACCAGCTGCTGGAGCCCGTGTGGGACCTCAAGAGCCGGCTGTGCCGCAAGCACCGCAAGCTCCGGCGGCTGTACTGCCGCACCGAGGGCTGCTGCGTGTGCGGGGCCTGCCTGCTGGAGGAGCACAAGAACCACGACACCATCCCGCTGGAGGAGGAGCGCGCACGCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026645:ENSBTAT00000037969:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF152271=zf-C3HC4_4=WD(100=19.7),PF0064319=zf-B_box=WD(100=17.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGGCTCTCCTTGACAT
R:
GGAAGCTCTCCCGGCACT
Band lengths:
296-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development