MmuINT0004960 @ mm9
Intron Retention
Gene
ENSMUSG00000070332 | 4933422H20Rik
Description
RIKEN cDNA 4933422H20 gene [Source:MGI Symbol;Acc:MGI:3588186]
Coordinates
chr11:115302021-115303059:+
Coord C1 exon
chr11:115302021-115302064
Coord A exon
chr11:115302065-115302394
Coord C2 exon
chr11:115302395-115303059
Length
330 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ATTTTTCTCTGTCTTCTCAGGAT
3' ss Score
10.92
Exon sequences
Seq C1 exon
GGCAACAAAATATCTGGCTCTCATGGACATGCAGAAGATCTCAA
Seq A exon
GTGAGTTCAAGCTCCTGACCTTCCCTCCTAAGTGCCAAGGGAGTGGCCTCTCCCCCAGAGCATCTTGTCCTTCCTTCTGCCTTTCACCACCTCCCCCACAACTGGGGCTGAGACCAGGAAGTAAGATGCTCAGTGCCCACCCACATGGGGGTTGGCTGCCTATGCAGTCCTGGTTCCCTATGGTCAGACATCTGCTTCCAAAAGAAAGATGTAAAAAGGAGTATGCCTATGACATAAAGAACATGCCCCTGATGTGCAAGACCATGTCCCTGGGGTAAAGGGCCATGCCCTGGCCCCCTGCCATGCCCGGATTTTTCTCTGTCTTCTCAG
Seq C2 exon
GATCAGCCCAGGACAAACCCCCCTCACAGCTCTCTTCCCAGCCCTCCAGAACCCCGCTCCATCTCCTGATGGGCAGCAACAGCAGTCAGCACATGTTGGAAGACCAAGTCCTCTGTCCCATTTGCCTGGAGGTGTTCTGCAACCCAGTCACTACCGCCTGCGGCCATAACTTCTGTATGACTTGCCTTCAGAATTTCTGGGACCACCAGGCTGCCATTGGAGAGACTTACTATTGCCCCCAGTGCAGAGAGGCCTTCTCCAGCAGGCCCCGCCTCTGCAAGAACGTCATCCTCGGGGAGATGGTGGCTTGCTTCACCCAGGCCAAGAGCCAGACCTCAGGGTCCTTGTGGGGCCTGGCTGGCCCCACAGATGTGCCCTGTGACTTTTGCTCTCCGCAGAAGCTGAGGGCAGCCAAGTCATGCCTGCAGTGTGTGGCTTCCTTGTGTGAGAAACATCTGCGCAGCCACTTTGAGGACCAGCTGTTCCAGGACCACCAGCTGTTGGACCCAGTGTGGGACCTCACGAACCGCTTGTGCCGCAAGCATCGCAAGCTCCGGCAGCTGTATTGCCGCACGGAGGGCAGCTGCGTGTGCGGAGCCTGCCTATTGGAGGAGCACAAGAACCATGACACCACCCCCCTGGAGGATGAACGGGCCCGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070332-4933422H20Rik:NM_001033775:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF152271=zf-C3HC4_4=WD(100=19.8),PF0064319=zf-B_box=WD(100=18.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCTCATGGACATGCAG
R:
GTGAAGCAAGCCACCATCTCC
Band lengths:
347-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: