BtaINT0005730 @ bosTau6
Intron Retention
Description
LOC526787 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q1LZH3]
Coordinates
chr19:56993408-56994919:-
Coord C1 exon
chr19:56994857-56994919
Coord A exon
chr19:56993987-56994856
Coord C2 exon
chr19:56993408-56993986
Length
870 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
CCCATACCCCCTCGGCCCAGGTT
3' ss Score
5.33
Exon sequences
Seq C1 exon
GCATTAAGATGAACTCCTATGAGGTGCTGCCCCCGGATGTGGACAGGAAAATACTTCTCAAGT
Seq A exon
GTGAGTCCTCAGTCCTGGGGTCCAGCCCCAGGGGTGGGAAGGAAAGGAACAGGGCCCTTGGTTGCCCAGCCGACCCAGCCCCACCTCCATTCAGGCCAAGGCTCCAGAAAGATGCCAGATCTCTCCTGCCCTGACCTTGTACTCTGGACTAGAGACCTCAGAAGGCCTGTGATTCCACGGCCCTGAGAGGAAGGGGAGAAGGCTGTCCTGTCCCATGCCCATGGGTGGCAGGGCCTTGACCAACACCCAGAGGCCAGCTCTACAGCCCTTGTGGCCCTGATGTGGCTCAGCCTCTGCCCTCAGCTGGGTGCCTGCCGACCTCCGCTGGACTTTAGCCAAGCCAGCTTGGATGGCCCTTGTACAGTCAGTCTCCCTTTTCAGTTAATGTCCCTGCAGCCCCTCTCCCAGGCTGGGCGAGGGACCAAGTGACTCTCTAAGAAATCATCGGTGATGTCTCTGAGGTCTCCAGGGTCACAGCTGATGAAGCCTCTGATGACCCCTTCTGAGCGACCTCCTCCAGGAGCCGCTGACGCTCCCTTAGTCCCACGCAGTCTTGTGTCCTGCACAAACCGAAAAGGGGATCCTGTTAGGCTTTGGCTGGGGAGGGCAGATGGGGGACTCTTGGTTGCCCACCTCTCTAGGAAGGCAGGCCTTTGGACAGCGCCCAGCCAGACAGTGTCCACCCCTGCAGGCTGGAGTTGAAGACTTAGAGAGGGGAATGGAGGGGCCGCTCTTGGGAGCTGGGGGTGGAAGCACTTGGTGACTTTTGTGCCGAAGCTGTGAGCTTCGGCCCTCCCCTGTCCAGACCTCCAGCGCTCTGCCCCCCGGGCCTGCGGACCCTAGCCCCTTTCCCATACCCCCTCGGCCCAG
Seq C2 exon
GTTACTGCAACCTGAACTTCGACGCCACCACGGCCAGCGAGGAGCTCTTCCTGTTCAAGGAGACCCACTCGGTGCTGAACCTGGGCATCCTCCTGGAGCCCTTCGCGGCGGGCGGCCCCTTCCCGGGCTTCAAACAGTGGCCGCAGGTGCTGTGCTCGCGCGGCCTGGCCGAGGGCCGCCACTACTGGGAGGCCGACGTGTCCAACTCGTGGGTGTGCCTGGGCGTCACCTACCGCCGCAGCCCCCCGCTCGGCGGCCGCCCGCGCCGCAACATCGTCTATTTGCTGGGCCGCAACCCCTACTCGTGGTGCCTGGAGTGGGACTCGCTCAAGTTCTCCGTGTGGCACAACAACACGCAGACGGTGCTGCACGGCGGCTACCACCGCACGCTCGGCGTGTTGCTCGACTGCGCGGCGGGCTGCCTCTCCTTCTACGGCGTGGCGGGCGGCGTGAGCCTCCTCTACCGCTTCCTCGCCTCCTTCCTGGAGCCGCTCTACCCTGCCGTCATGGTCAGCAGCGGCGCCTCGGTCACGCTCAAGCAGCGCCCCTCCGAGGCCTAGGCCAATAAAGCTGGACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026645:ENSBTAT00000037969:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062223=SPRY=WD(100=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTCCTATGAGGTGCTGCC
R:
GGCCCAGCAAATAGACGATGT
Band lengths:
344-1214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development