BtaINT0006093 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B977]
Coordinates
chr5:100189880-100191896:-
Coord C1 exon
chr5:100191692-100191896
Coord A exon
chr5:100189985-100191691
Coord C2 exon
chr5:100189880-100189984
Length
1707 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGTGTTTTCAGTCCTCTCAGGAG
3' ss Score
3.22
Exon sequences
Seq C1 exon
TTTTTTTCCTATATAAAGATGGATGAAGAACCCATAATTTATAGTATTACTACTCTAAACCAGGATTTTCAGCAGAGGCATACACCAAAAAATATTAAGCATAAATTGGATCCTAATGAATTGCCATTAACCAAGAAGAAGCTGAAACACCAGAAACCTTGTAAAAGACAGCACAAAAATATAGCAGAAGATGTCAATGATGAAG
Seq A exon
GTAAGCTACATTAAAACAGAGGATTCAGTAAACATGTAGAGAATGCCTAAAATTGTATACTGACATGCTATGCACTGGGAGATACAAAAATACAACAGTTTCTAAACTTAGTTAGAAAATGAAAATGTACAAGCAAAAATGTAAATGTTAATTTAGTGCAGATAACGCTAAAGGCCAAATGTTAAATGCTGTAAATAATTTAAAAGATACCTTGGATAGTTTAGAAATTTCACTGCTAAAGTGGGAGTTTATTTAGACTTTAGAGGAAGAATATGATTTGAATAGAAAAGCGTTGGAAAGTAATTCCCTTGAGACAACAATGGTAAATGAAGGACAATGACTAGCTGTGGCTGTTTGAGAGGATTGAGTTAGATACCTTGATTGGAAGCCAGAAGTTGTATAGTGTGAGAAATAAATATTTTTGACTGATTGATCTCTGGGCTAGAGTTGCATACTTTGTGCCATAATCTTTGATGTAACTATTTACATAAGCAGAACATAAATGTATTTCTTTTAAATTTGGAGCACAAAATAGATTGGGTAAATCATTGTCAAGTGCCACTGAGAATCCAGGTGAAGTTTGGGATCCTGATGTGAATTAGTGGCAAGCTGTTTGACTTCCTTCATCAGATATCTGTAACAGTGCACAAGGTGTATAACATGGAAAATGAGCAGTTGGCATCAGGGCAATCACTCAGGTGACCCATCACTAGGTCTAAGTTGGGTGATTAAGGCATGGTGGTGATAACTAATGAAGAGACTGTAAGAGATGCGTGACAATCATATTGGGGAAGAAATTCAGTGGGAGGAAGGAAGTTGATATGAAAGATAAAGGTGATACTCAAAAATTATTTTTTTTTTTACATATTAAATGTCCCCGAGTTGAATGACAAAAATAAGCCTGCCTTGTATAGCTTTTGATCTTCCAACTGGTGAAATATAGGTCCATCAAGGATGCTGGCAGCTTTTTTTTTTTCTTAAAGATTTTTTTTTTTTTTTCCTGATGTGGACCATTTTTAAAGTCTTTATGGAATTTGTTACAATATTATTTCTGCTTTATGTTTTGGCTTTTTAGACATGAGGTATGTGGGATCTTAACTCCCCAACCAGGTCTCAAACCCACAGCCCCTGTATTAGGAGGCAAAGTCTTAACTGCTGGGCCATCAGAGAAGTCCCTAACTTCTTATTCTTACCATAACACCATCATTGGTTCTATACTTGCATGAAACACTATGAACCTTGATATATGACAGAAGAATAAACAAACAGTATTTGTTGACTTCCTAATCTGAATTGTAGCCTCTTTTAACTTTTCATGTTGGAAAACTGCTCAGTGCCTAAATGAATCAATTGACATTCTGCAGTTTTCTTGCTCAGCTTATCTTTCTTTTCTTTTTTTGGGGTGGGGAGAAAATGATGGTAAGTTTTGGAGGCAGCATTAGTGAATTAGGGACTCTGTTTTGCTGTGAATTGATTGTGTTATATTACACAAAAAACCTGTGGAAAAAAATGAGATTTTTTAAAACTTCTATTTCAGTATTATCTAAAACTGTTTGAAAATATTTTGCAGGCCTGTTGTGAGAATCAAGAATTGACATGTATTTGATGTGTTCTTAACTGTAAATTACTCTTTCAGCATTGTGTTTATTCATCCAGTCATCTTGCTTCATCTAATTTTGATTCTGCTTGTGTTTTCAGTCCTCTCAG
Seq C2 exon
GAGATGTCTTGCCTCTTCCATGGAGGCTCATTTCTAAAATCCTGGGTGTCTTGTGCCTTCTCCTAATGGCCATGGCCATGGTGGTAGCTGTTGTTACTGCAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030426:ENSBTAT00000042959:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF054737=Herpes_UL45=PU(31.7=71.4)
A:
NA
C2:
PF054737=Herpes_UL45=FE(24.6=100),PF148621=Defensin_big=PU(32.9=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGGATGAAGAACCCATAATTT
R:
AGTTTGCAGTAACAACAGCTACCA
Band lengths:
296-2003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]