MmuINT0088272 @ mm10
Intron Retention
Gene
ENSMUSG00000050241 | Klre1
Description
killer cell lectin-like receptor family E member 1 [Source:MGI Symbol;Acc:MGI:2662547]
Coordinates
chr6:129579918-129582103:+
Coord C1 exon
chr6:129579918-129580117
Coord A exon
chr6:129580118-129582001
Coord C2 exon
chr6:129582002-129582103
Length
1884 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAA
5' ss Score
7.08
3' ss Seq
CTTGGGTTTATCTTTCTCAGGGA
3' ss Score
8.08
Exon sequences
Seq C1 exon
CATTTTTGTCTTTATAAAGATGGATGAAGCACCTGTAACCCGTTCTACCCTAAATGTGAATTCCCAGCAGAAGAGTAAAGCAAAGAACAAGATTAAGAATACACTTAATTCAAATGAATTGTCATCCATTGAGCAGAGGAAAAAATACCAGAAACATCTTAAGAAGCACAAAAACACAGCAGAAGACATCAGTGGTAAAG
Seq A exon
GTATAATATTGTATTCAATAAACACAGGGAGATTGTTGAAAATTCAGGTTAAGGTCAAGTTTTGTTAGATACTAGGGATATACATTGCTTGCTGTTAAAGAGATATTTGCTTTAGCCTTGAATGGAAAAAAATAAACTTTTAAGAAGTGAAAAAGGATAGAACTGAACTCCCTGGCTACAGGATTATAGAAGTTAAAATATGAAAAAATTACTGGATATAGCTGCCCAGGGCAGTGGGTCTTGGAATCCTGTTCTGGGGCATTATGAATTTGGTTGGTCTGATGGGTTTCTGACCAGGTTATTGCGTGCAGGAGAAGCTGAAACTTTACTCTCATAATACCCTGAAACAAGCAAAAAATAAATGTATTTCCTTCAGACTTGGACTTCAAAACAAGTTGGATATAAGCAAAGATAAAATCAATTCTTTGTGAAGGTTTCATGCAGCTAATGTAGTTATGGCTTATTTCTGGGATGTTCCTCTGGTTATCATTTAAGGCTTGCCTTAAATGTCTGGAAGATCCAAGCATCTTAGATAGAGAAAGGGAAATTAGGAATTGGCAGATGACAATTTACAGATTGCTAAGTAAGGAAGGAAGCAAAGAAGAAAGGAAGGAAGGAAGGAAGGAAAGAAGGAAGAAAGGAAGAGAAAATCTGAGCTTGAGTGGCAAAGCTCTAGGGACCAGAATGCCACCTTCATCTTCAGACTTACCTTGTTTTTTTAAAATACAGTGAGGAATACTGCTAAAGTGGAGTGAGTAAAGCATGAATTAAGTTTCTCACAGTAATGCTAGTAGTCTGAAAACTCACCCCCCAAAAATCCCATTTCAATGAAGCATAGGCTTCCATAGAATGTTTACTTAGAGCATGTCGATCTTGAGATTGTGTCCATTCAGTGGTGAATGTTTGGAAGAGAATATTAGCGGCAAGGCAAAAGGAAAGAAAAGCCAAGTAGATGAGAAACGCTGGCCGAGAGGAAGCAGACTGCTGTGTGGCACTGAGCACCCAGGTGAAGTTTGAGTCTATTGTGGATGTGACTCCCTCCCAGTCTGTTTGCCAGCAGAGAGAAGGTAGAGTCCATCAGCTGACCAGTGCTAGCCAGGTAGATGCACTAGAAAGTGTTGGCAGTGTGGCCAACCCTTGTTCTCAGCTTCATTAGTAAGTCTCCTCCTTGGACGACACAGTATAAACCTTGACACGTGCTTTCTGGGTTAAAGAAAAGAGTCGGGAAGTATGGAAGGGAAAAGGACTAGTAAAAGCGGTTCATTTGGCTTCCTAGTTTAGAATGCAATCACCTGTACAGAGAAAAATTCAGAGCTAAATCAGTCTTTTCTCATTTATGTTTCAAATTGTATTCTCTTAGTTCCTCCACCACACATGCCCTCTTCACCCTAAAGAGGGTGCTAGAGAGTAGGGTTTGAGGCCAAATATAGGAATAAAAGGCCCAGTTCTAGTAAATGATTATTTTCACTGAAAAGGCTTTTTAATTTAGTTCCTGTGTTATACAAAATTATAAATTACTCACTGATGTTTTTGGCTTACCTTTATGCAGTGGTATTTATATTTTCCACATTGACTACTGAACTCTGTTTTAAATTAAAGATATTAAACTAGTTCCACGGAGCATTCCAGATACATTAGTCCCAGGTACTTGTGATGTTCGATAAATAAATATATTACTGTTGTTTAGGAATTTTTAAAAACCATTGTGCCATTGTTTGCTTTAAATCTTGGGTGAAAAATTTAACAGGCTGGCTATGAAAATCAGAAGTGAATCATTGGAATGCTCTGCTGATGAAAGCAATCCCTGGATCAACCTGGCCCAGCCTATCACCTCATGCCACTGCCCGATGCCTTTGATCCCACTCTTGGGTTTATCTTTCTCAG
Seq C2 exon
GGAATTGCTCACCTCCATGGAGGCTTCTCTCGAGTGTGCTCGGTGCCATGTGCCTTCTCCTGATGGCTGTAGCCATGGTGATGACCACTTTTACCACAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050241:ENSMUST00000053708:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTATAAAGATGGATGAAGCACCT
R:
ACTTTGTGGTAAAAGTGGTCATCAC
Band lengths:
294-2178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types