RnoINT0080280 @ rn6
Intron Retention
Gene
ENSRNOG00000058714 | Klre1
Description
killer cell lectin-like receptor, family E, member 1 [Source:RGD Symbol;Acc:727903]
Coordinates
chr4:163349125-163351823:+
Coord C1 exon
chr4:163349125-163349315
Coord A exon
chr4:163349316-163351721
Coord C2 exon
chr4:163351722-163351823
Length
2406 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGA
5' ss Score
6.99
3' ss Seq
CTTGGATTTATCTTCCTCAGGGA
3' ss Score
7.57
Exon sequences
Seq C1 exon
CTTTATAAAGATGAATCAAACACTCATAATCTGTTCTACCCTAAATGTTAATTCCCAGCAGAAGAGCAAAGCAAAAAACAGTATGAAGAATACATTTCATTCAAATGAATTGTCATCCATTGAGCAGAGGCAAAAATACCAAAAACATCTTAAGAAGGACAAAAAGACAGCAGAAGACATCACTGGTGTAG
Seq A exon
GTATGATACTGTATTCAGTAAACACAGGGGATATTGTTGAAAATTCAGGCTAAGGTTAGTTAGATAGTAGGGATATACAAAAAGTGGGCAGAAAGGTTTCTTTCTTCCTTTCCTTTCCTTTCCTTCCCTTCCCTTCCCTTCCCCTTTCCTTTCCTTCCCTTCCCTTCCCTTCCCCTTCCCTTTCCCCCTCCCCTCCCCTCCCCTCCCCTCCCTTCCCTTCCCTGCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTCTCTCTCTGTCTCTGACTCTGTCTCTGTCTCTCTCCTCTCCCTCTCCCTCTCTCTCTTTTCTTTATGAACCTAGTCAGAAACACACAAGTTACATTGAAGTATCAGTTTAATCTAGATTATAAGAAAGACCAACTGGTCAACACCATAATGATTAGAGTTATCTAGATTGTTTACATTGTTTGCCGTTAAAGTGAGAATTGCTTTAGCTTTGAATGGAAAAATAAACTGTTGAGAAGTGAAAAATGGTGGAAATAAAATCCCTGGCTATAGAATTATAGAAAATAAAGTATGAAAAACTACTGGATATAGCTGTCTAAGGCATTGGGTTTTGGAATTTTGTTCTGGGGCATTATGAATTTTGTTGGGGTGTTGGGTTTCTGACCTAGGGATAGTATGCAGGAGACTCTTTGAAACTTTACTCTCATAATATACCGAAACAAACAAAAGACGAATGTGTTCTCTTCAGACTTGGAACTCAGAACAAGTTGGATACAAGCAAAGATAAAATCAAATCTTTGTGAAGGTTTCATGCAGTTAAGTAGTATAGGTTATGGCTTATTTCTGGAATGTTCCTCCAGTTATCGCAGGCTTGCCTTAAATGTCTGGAAGATCCAAGCTTAGACAGACAAAGGGAGATTAGGAATTGGCAGAGGCCAATTCATATATTGCTAAATAAGGAAGGAAGGAAAGAAGGAAGGAAGGGAGGAAGGAAGGAAGGGAGGAAGGAAGGAAGGAAAGAAGGAAGGAAGGGAGGAAGGAAGGAAGGGAGGAAGGAAGGAAGGGAGGAAGGAAGGGAGGAACGGAGGAAGGAAGGAAGGAAGGGAGGAAGGGAGGAAGGAAGGAAAGAAAGAAAATTCAAGCTTAAGTGGTGAAGTGCTGAGAACCAGAATGCCACCTTCATCTTCAGTCTTACTTTATTTTTTAAAAGGCAGGGATAATCACAGTGAGGAACGCAGCTAAAACAGAAAGAGTAAAGCAGGAATTACGTTTTCCATAGTAATTCTAGTAGTCTGAAATCTTGCCCCCAAAAGAAAAGAAAGCAAAATCTCACTGCAACGAAGCACAGGCTCCACGGAATGTTTACTTGGAGTATGTCGGTCTTCATTTCTTTCTCCTAAGAAGAGAATGTGTCCAGTCAGTGGGGAGTATTTGGAAGAGAATATTAGCAGCAAGGCCAAAGGAAAGGAAGGTCAAATAGATGAGAAACACTGACCGAGAGGAAGAGGACTTCTGTGTAGCACTGAGCATCCAGGTGAAGTTTGAATTTATTATGGATGTGACTTAGTCCTAGGCTCTTTGCCAGCAGAGAGAAGGCAGAGTTCCTTCAGCTGACCAGTGCTAGACAGGTAGATGCACTAGAACGTGCTGGTAGTGTGGCGACCACCCTCATTCTCAGCTCCATTACTAAGTATCTTCCTTGCATGGCACACAATAAACCTTGATACATGCTTGCTGGGCTAAAGAAAAGAGTCAGGATATATGGAAGTGGAAAAGACTGATCAAAAGCTGTTCATTTGTCTTCTTAATTCAGAATGCAATCACCTATACAGAGAATAATTCAGAGCTAAATTTATGCTTCAAATTGTATTCTTGGTTAGCTCCCTTACCACACAAACCCTCTTCACCCTAAAGAGGGTGGTAGAGAGTAGCGTTTGAGTTCAAATATAAAAAATAAAAGGCTCAGTTCTGTTAATTGATTATTTTAACAAAAAAGCTTTTTACTTCAGTTTCTGTATTATACAACTTGTGAATTACCAAAGTTTTTGACTTATCTTTATTCAGTGGTATTCGTGTTTCCTATATGGACTTCTGAGCTCTGCTTTAAATTAAACATATTAAACTAGTTCTATGGAACTTTGCAGGTACATTAGTTCCATATCATGTGGTGCTCAATAAGCAAATATATACTTGTTGTTCAGGCATTTTTAAAAACTCATGAGCCATTGTTTTAAACCTTAGGTGAAAATATTTAGCAGGCTGGCTATGAGAATCAGAAATCAGTCACTGGAATGCTCTGCTGATGAAGGCAGCCCCTGGAACAACCTTGCCCATCTCCTCACACCCACTGCCAATGCCTTTGATCCCACTCTTGGATTTATCTTCCTCAG
Seq C2 exon
GGAATTGCTCCCCTCCGTGGAGGCTCATCTCTAGTGTGCTCTTTGTGGTCTGCCTTCTCCTGATGGCTGTAGCCATGGTGATGACCATTTTCACCACAAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058714:ENSRNOT00000084823:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]