BtaINT0006205 @ bosTau6
Intron Retention
Description
Membrane cofactor protein [Source:UniProtKB/TrEMBL;Acc:F1MLR1]
Coordinates
chr16:77741890-77742684:-
Coord C1 exon
chr16:77742631-77742684
Coord A exon
chr16:77741926-77742630
Coord C2 exon
chr16:77741890-77741925
Length
705 bp
Sequences
Splice sites
5' ss Seq
TAGGTATTA
5' ss Score
4.71
3' ss Seq
CTTTTAAAACTTTTTCTCAGATG
3' ss Score
7.68
Exon sequences
Seq C1 exon
GATACCCCAATCCCAGTGACGAAATACCATCACTTGAAGACTTTGAGGATTTAG
Seq A exon
GTATTATTTTGATTATTAATAACCTGCATTACGAAACCTTAGATTTCTATATAGAAACATCATGGTTCAATCATTTGTAGGTAGGGAAGAAATAATGTGTCACAAATAATTGGTAATAATTGACATTTACAATTGTGTTATTAATGCAGATACCACGACAGATGTTAAGTGGTGGGATATAGAAACACATGTAGGTAATTTTCTCTAATCTAGTGGATTCTAATAGTCTTGGTGTGCTTGTATGCTAAATCACTAAGTCATGTCCAACTCGTGACCCCATGGACTGTAAGCCTGCCAGAATACTGGAGTGGGTTGCCATTTCCTCCTCCAGGGGATTTTTCCCAACCCAGGGATTGAACCCTGTCTCTTGCATGTCCTGCATTGGAAGACAGATTCTTTACCACTGAGCCACTTAGGAAGCCCTTGATAAGCTGTACGCAGTAACCTGGAGTGGTAGCTATAGCAGAACACAATGAAAAGGGAGGTTCCTGTTAAGAGTTTAACAAGATGGATCCTGTACCTGGAATCTATTTAAAAGGGTTCTGTGATCAAAATGACTTGGATGCACTCAGCAGTCATGTGCAAACTATATTGATAAACATTTTTGCTGTAGTTCTTAGATGATCTGATCAAAATTAAAGTATAGCTGCTATCTGGGATCCATATGTGTTCCATATCTTCAAAACTTTTAAAACTTTTTCTCAG
Seq C2 exon
ATGCAGGAATCATTGCTCTGGCTATTCTTACTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030910:ENSBTAT00000043743:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152811=Herpes_glycop=PU(1.1=5.3),PF0293211=Neur_chan_memb=PU(1.0=5.3),PF084965=Peptidase_S49_N=PU(1.0=5.3)
A:
NA
C2:
PF0152811=Herpes_glycop=FE(12.6=100),PF0293211=Neur_chan_memb=FE(12.1=100),PF084965=Peptidase_S49_N=FE(12.1=100),PF041569=IncA=PU(11.3=84.6),PF0334810=Serinc=PU(10.5=76.9),PF074236=DUF1510=PU(9.5=69.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development