BtaINT0006359 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKG0]
Coordinates
chr7:16608954-16610789:-
Coord C1 exon
chr7:16610680-16610789
Coord A exon
chr7:16609084-16610679
Coord C2 exon
chr7:16608954-16609083
Length
1596 bp
Sequences
Splice sites
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
3' ss Seq
CCCTGTGTCCTCTTCCCCAGGCA
3' ss Score
11.53
Exon sequences
Seq C1 exon
AGCATAAAAGAGCAGGCCCGGCGGTGCTGTCCTGACGTCAAGCACATTGACGTAGACATCAACCGCGCCTTCAGGAATAACCTCTTCTTCTGGGAGCGAAACGGAATCAA
Seq A exon
GTGGGTCCCCAGGTTCCTGGCGGGGAGGCCGTGGACCTGGGTCTGGAGCTGGGGTGGCAGGGTGTCGACCCCTGCCCGTCCTGGCTGTACAGGCTGAGCCTCGAGGGGGGCGCGAGTAGGCACGTTAGGAGCCCGGGCAGAGGTGTAGGGCTCGCGGCGGGTGGCGGTTGGCGGTTGGAGAGGGGAGAGTGGGGCGGGGCACCCGCTGGAGGGGAGGGGCTCCAGGCGGCAGAGACCTGGCTGGACAGGAGCTCAGATGGACTGAATTCGGGTTAGAGGGTCAAATGACGCCCCATCTTGATGGTGTTGCTTACATATTTCTACTTCTACAGTTTCCATCATTTGTAAAAATAGATTGGTGAACCCCAAATTTCATCACTTAGGGACCCAGCCCCATCCCATCTCCTGCGTTCACCACATCCTTGACCAGCACATGCCTTTCACAGAGGACCCAAGACCTCTGGCCTCACCCCATTGCTAGGCTCTCAGTATGCTTTTTTTTGGCCACGCCATGTGGCTTGTGGGAGCTTAGTGCCCTGACCAAGGAGCAAACCCATGCCCCCTGTGGTGGAAGAACAGACTCTTAATCCCTGGTCAGCCAGGGAACCCCCCCAACCTACTGCTGCTGCTGCTAAGTCATTTCAGTCGTGTCCGACTCTGTACGACCCCATAGACGACAGCCCACCAGGCTCCCCGGTCCCTGGGATTCTCCAGACAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCGTGGAAGTGAAGTCGTGTCTGACTCCTAGCGACCCCATGGACTGCAGCCTACCAAGCTCCTCTGTCCATGGGATCTGCCAGGCAAGAGTACTGGAGTGGGTTGCCATTGCTAACCCTAACCTACTGCTGCTAGTATGCATTTTAAAAACAAGAATTCTTGGGAATTCCCTAACAATTCAGTGGTTAGACTCCACACTCTAATTGCAGAGGGCCCAGGTTGCATCCCTGTCAGGGAACTAAGCTCTCACAAGCCAAGCAGTTGGGCAAAAAGAAAAGAAGAAGCGGGATTCTTTTTTTACACGTGACCTCAAGCCTGTTGCAACACCTGAAGCGTGTACTGTAATCCCTTAATATGCACCCAGAGATCACGTCTCCCAACACTTCGTGCTTTCTGAATAAGCTGTTCCAATCCAGGTAACTGGAGTGGGTTGAAGACACTGACAGCCAGGGAAAACATATGGGGAGGCAAGAGAGAGGGTTCTGCCACAACCAATTCAGGTTGCAGGCTATTGGCCTGCAGATCAAGCTCGCTCTGGACCAAGAGACACTCTTCAGAGCCTCCACCCCAGAGAGAAGAGGGGTCTGGCCACAGCGGGGCTGAGAGCAACAAGGCAGGAGTGGGCTGTGCTGCCCGAGTGGTGACCCCAGACCCCTCATGCTCCTCTCACAGTGAGATGTCTCTACTGAGGGGCCCTGCCAGTCCCAAAGCAGCGTGGCCCCAGGTCTCCTTGGCTTTGGGGGCTCATTTCTTAAACACACTTGCTTTGTCGTGAGGCTCTGTCAGACAATATAAAATTAAGAGCATCAGTGTGAAAGAAGCCCCCTGTGTCCTCTTCCCCAG
Seq C2 exon
GCAGCAGGCCCTGTTCCACGTGCTGGTGGCCTATTCCATGTATGACACTGAGAATATCTGCGCACCCAGGCCCTGCCCATTCCAGGGGGTCTTCCTGCTGGTCACGAATCAGGAGCATCCAGGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032364:ENSBTAT00000045920:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(17.6=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATAAAAGAGCAGGCCCG
R:
CTGCTCCTGGATGCTCCTGAT
Band lengths:
238-1834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]