HsaINT0164209 @ hg19
Intron Retention
Gene
ENSG00000197681 | TBC1D3
Description
TBC1 domain family, member 3 [Source:HGNC Symbol;Acc:19031]
Coordinates
chr17:36342584-36343995:-
Coord C1 exon
chr17:36343886-36343995
Coord A exon
chr17:36342633-36343885
Coord C2 exon
chr17:36342584-36342632
Length
1253 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
CCCCTTTCTCTGTTTCCTAGGCA
3' ss Score
10.78
Exon sequences
Seq C1 exon
ATCATGAAGGAGAAGGGCAAGAGGTCATCTGAGCACATCCAGCGCATCGACCGGGACGTAAGCGGGACATTAAGGAAGCATATATTCTTCAGGGATCGATACGGAACCAA
Seq A exon
GTAAGCCTACGGGAGCCACAGGGTCCCAGCAGAGATGGGGTGAATGAGAGGGATGGGGGCTTCCCCGGAGCAGAAGCCAGGGTCACCCAGGAGGGATGACACAGCTGCCAAGAGCTCTCCCGGCCCAGGGAGCAGCCGGCACCATGAACCGAGCACCTCCCTGGTTCCAAGCCCTGGGCCAGACTGGAACATGTGGGGCCAGAACCCAGGAGGATCCTGAGGAGATGGAAGGCAGCAAACAAAATCATGCACAATGGTGAAGGGTGCTCTCCCTGACCCATGGGGACCCATGGTAGGACCCACGGGAGGGTGGCAGGATAGAGGGCCCATGAGCCCCCCCCAGGCAACAGTGACAGCACCAAATGCTGGGAGAATTAGGGGTCCTGGAAACTCTCATCCAGGTCCGCTGGGAACATGACATGGCACAGCCACGTTGGCAGCCCGTTGGGCAGTGGCTCACAAAGCTCGATGGACTTGAACCACACATCCCCAAAGTGTCACAGATATTGAACCCACTGATTTGCAAACTGACATCCACATGAAACCAGCATGCCAGGTTCACTGCTTGACTCCTCGTCACTCACACACGGAGCCTTCGGGGACGGCCTTCAACACGGGGATGGGGAGAGCAAGGCTGGTCCTCCCTTCAAACGGAAGACCCAGTGAGAAAAGGGAACGAGCCGGTGATGCCCGCACGAACGTGGGTGGATCCTAGATGCATTTTGCTGAGGGACAGAAGCCAGACCCAATAAGCTACCACCGTAGGATTCCCATTCCTAGGCCATTCTGGAAAAGGCCAAACCACAGGGACTGAGAAGCAGTCTGGGTGGCCAGGGGCTGACGGATCGGGGAGAGGCTGGGTGCATAGGGGCCACCCTGGAGACTTGGAGGATGAAGGAGTCGCCCCAGGAGGGGCTGGAGCGGTGGCCGGGAGACTCTGCACATCGGTTTGGAACCGTGGAGGAACTGTACACCCACAGACTGAACTGGCGTGTGTGCAAACTGAAAAAAAAAAAAAAATCATTCAGAGTGAAAAGGATCAGGCAAGTCACTGTACAACTGGGCTATTTGCATGTCACAGATGTGGATTTTACTGAAACATTTCTTCAAGAGTCTCAGGCCCTGAAGAGCTCACTGCTTATCTGGTGAAACATCTGAACCTGAAATGGGATTTGCTGTTAGGCTTTGTAGACAAAGTGAAATTAACAACATCTGCACAAAACAAACCAAAGCCCCCTTTCTCTGTTTCCTAG
Seq C2 exon
GCAGCGGGAACTACTCCACATCCTCCTGGCATATGAGGAGTATAACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197681-TBC1D3:NM_001123391:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(22.8=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)