BtaINT0007173 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1ML28]
Coordinates
chr22:53287372-53287998:+
Coord C1 exon
chr22:53287372-53287395
Coord A exon
chr22:53287396-53287760
Coord C2 exon
chr22:53287761-53287998
Length
365 bp
Sequences
Splice sites
5' ss Seq
AGGGGATGT
5' ss Score
0.69
3' ss Seq
GGCATGTTCTCTTTCCACAGCTT
3' ss Score
8.78
Exon sequences
Seq C1 exon
TCCAGTGGTTAGGGGTCTGCTAGG
Seq A exon
GGATGTGGTTTAGAGGGAGAAAAAGGCCAATGGCTGCCATGTGTGCTAAGTCACTTCAGTCGTGTCTGACTCTGTGTGGCCCTATGGACCATAGCCTAACAGATTCATCTGTCCATAGATTCTCCAGGTAAGCATACCAGAGTGGGTATCCACGCTCTCCTCCAGGGGATCTTCCAGACCTGGGGATCAAATCCGAGTCTCTTATGTCTCTTGCTTTGGCAGGCAGATTCTTTACTGCTGAGCAACCCGGAAAGCCCTGATGGCTGTTGTAGGAGATGGGATCAGGATGAGAAGAACCTGGAAGGGGTGGGGGGGGAGTGTAGCCCCTCCACCATCTCTGTGAGGGGCATGTTCTCTTTCCACAG
Seq C2 exon
CTTTGAGGAATATACAGTGCGGATGGGAAGCACACTGTTACTTCCCGAGTCGGGGATGGTCATTCCAGTTCGAGACATCGTTTGCCATAGCTTTTATGATGTTAGAACTTTGATTAATGACATTGCCCTTGTTCTGCTGGCCCACTCTGTGAATTATTCTGCATTCATCCAGCCAGTGTGTCTCCCTGAAAAGAATTTTGAAGCAGAAACTGGGACACGGTGCTGGGTGACTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037821:ENSBTAT00000054998:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(6.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(59.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTGGTTAGGGGTCTGC
R:
CCATCCAGTCACCCAGCAC
Band lengths:
262-627
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]