MmuINT0127511 @ mm9
Intron Retention
Gene
ENSMUSG00000058398 | Prss43
Description
protease, serine, 43 [Source:MGI Symbol;Acc:MGI:2684822]
Coordinates
chr9:110730260-110731289:+
Coord C1 exon
chr9:110730260-110730419
Coord A exon
chr9:110730420-110731026
Coord C2 exon
chr9:110731027-110731289
Length
607 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
GTCCCATGCCATCTTTGCAGGCA
3' ss Score
8.83
Exon sequences
Seq C1 exon
ACACTTGCGGCCATAGAATTACAGAGGTAGATCCTGGAAGTTTATCTGCAGGGAGGAAGTGGCCTTGGCAGGTGAGTCTGCAGAGTCAAAATGAGCATGTTTGTGGAGGCTCCCTCATCAGCCACCGATGGGTGTTGACTGCGGCCCACTGCATATATGA
Seq A exon
GTGAGTATTTGGGGACCTGGTTTGGGGTGTCTTGTCCCTCATCTCTTAATGTCTTTCATCCAAAAAAAAAAGAAGGAGGAGGAGGAAAGAGAGAAGGAGGAGGAAGAGGAGAAGGAGGAAGAAGAGGAGGAGAAAGAAGAGGAGGAGGAAGAGAAGGAGAAGAAGGAGAAGAAGAAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGAAGGAGAAGGAGGAGGAGAAGGAGAAGGAGGAGGAGAAAAGGAGGAGAAGGAAAGAGAAGAAAGAAAAAAGAAAAAAGAAAGGAAAAAAAGGAAAAAAACGTTTTTCCCTTTTTATCTGTAAAAGGAGTGATGATCCAAGGATTTTTATCCAGTCTCAGGTGACACCTGAGCATCATCTGGTTTATCAGGTTTCCAGGCTACACTGGTCTAGGAACCACACTTGCTGGGAGGCATGGATGGTCAGGGGTCCTGGAGAAAGAGGTATTGTTTGAAGGGAGGGAGCAGGCTGATGCCTGCCTGGCATGGGAGATGAGGCCAGGCTTAGAAGCATGCACCACGTGTAGCGTGGGTGTGCAAACCCTTCGGGAGCTCTGTAATGGTCCCATGCCATCTTTGCAG
Seq C2 exon
GCAGGAGGAGTACATGGTGATGTTGGGTGACGACATGCTGCATTCTGAATCTGAAAGTGTGACCCTGGTCCCAGTCCAGGACATCATTTTCCCTTCCAACTTTGACATTCAAACCATGAGGAATGACATTGCCCTTGCTCTGCTGTACTTCCCCGTGAATTACTCCTCGCTCATCCAGCCCGTGTGCCTTCCCGAAGAGCCCTTCCGAGTGAAAAACGGGACAGTGTGCTGGGTGACTGGCTGGGGCCAACAGAACGAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058398-Prss43:NM_199471:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=79.6)
A:
NA
C2:
PF0008921=Trypsin=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTGCAGGGAGGAAGTGGC
R:
ACTGTCCCGTTTTTCACTCGG
Band lengths:
343-950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: