HsaINT1028243 @ hg38
Intron Retention
Gene
ENSG00000206549 | PRSS50
Description
protease, serine 50 [Source:HGNC Symbol;Acc:HGNC:17910]
Coordinates
chr3:46754488-46756629:-
Coord C1 exon
chr3:46756042-46756629
Coord A exon
chr3:46754649-46756041
Coord C2 exon
chr3:46754488-46754648
Length
1393 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TGTAAATTGTGTCTTTGCAGTTT
3' ss Score
8.55
Exon sequences
Seq C1 exon
GTGAGCCATACCGACCCGAGGAGGATTCCAGAATGACCCCGGCAAGCCCAGAAGCCCGGACGTCTCCTGTGCACCCGAAATTCCCCAAAATTCCAGAAACTTCTGTAGCTCCAGGGTCTCCAGCGACCGCAGGGCCTCCAGGATCCTGGGTTACTTCAGCATCTACAGTGGGAGAAGCCTTGGAATCCGACGGAATCTCTGACCTTGGAAGGCAGTTTTCTCAGGGTATTGTTTCTGGTGCTAGATCTGTCCTGGCCTGCGGGGTAGGTCAAAGGGGACACAGCCTGGCTCAGGGAGGTTGAGGGTCAGACCCTGACCTAGATGATTTGAGAGAGAGGATAGATAACCCGCCTCCGCCCTGGGCAGCCTGGTGGGGTGGTGGGAAGGTAGTGGCTTCACTTCCAGTCCCCTCTCTTTACTGAGCCCACCAGCCTGTGGCCACCGTGTTTCAAGGATGATTGGAGGATTGCCAGCCCCAAACAAGAAGTGGCCCTGGCAGGTGAGCCTGCAGACCAGCAACATACACCACTGCGGAGGCTCCCTCATCGACAGGCGCTGGGTGCTCACTGCCGCCCACTGTGTCTTTAG
Seq A exon
GTGAGTGTTTGGGGCTCAGAGCTTGGGCCCTGATCAGGCTGTGGGACCTGGAGCCAGTCTGTCCCCTTCCCTGAGCTTCCTCTTCCTCATCTGTAAAAGGGGGTGACAGCCCCATAGTTTTTATCCAGTCTGGGTGAGACCTGAGTATTTGCATTTCTAACAAGTTTCCGGGTGTTGCCGCCGCCGCCGATCTGGGGACCACTGGCTAAAGTGGTCAGGGGTCCTGAGGGGATGTGGTTGGGAGGGAGGGAGGTGGCTGCTGGCTGGCATAGGAAGATGGGACCAGGCTTGGAAGCACCTGGAAGGTGTGGAAGGGGAGCATAGACGTCCCCCCAGGATCTCTGTGAAGGCCATCTTTTCTCTCAACAGTAATTTGGAATACAAGGTGAAGCTGGGAGACCCTGACTTGCATGCTGGTTCCAAAGAGGCACTGGTGATCCCAGTTTGAGACATCATTTTTCCTAGCAATTTTGATTTTGCCACTTTGACAAGCGACATTGCCCTTGCTCTGCTCGCCTACTCTGTGAATTATTCCTCACATATCCAGCCTGCGTGCCTCCCCGAAAAGCTTTTTGAAGTGGAAGCTGGGACAGAGTGCTGGGTGACTGGATGGGGCCAAGTGTCAGAGAGTGGTGAGACAGGCAGGATGCTGAGGTGGGACAGTCTGGTGGGCTGGGCTTGGCCTGCAAGCTATTGGGAGAGGCAGGGAGGCCATTTTCTAGCAGGTGGGTGAGGGAGGAGGGTGGAGAAGATGCTGCCAGGAAGTAATTTAACAACTATGTTATGAATTTCTGTCGTCATATTGGGACCTTGGGGCTTGGGGGCCAAGTGTAGTGGGTTCTCTTCAGGGTAAATTTCAGCTCAGGGTGATGAGCTGTCTGCCAATAGGAGCCAACCCCCACTAGAAGGACCTGCCTTGATGGGTTGAACTTCTTCACCCTAGCAGTGTAGGCCAAGCCAGAGCAACCCTGCCAGTGAGGCTGTGGGGACTCCTATCCTTAGGGAGAGGCACTACCTGTCTAAGAGTCTGTGATCCTGCTCTAGAAAGTAAAGATGCTTTACTGATGCACAGGACAGCCTGTCATTTCTGCTGATACTCAGAGTGACAGATACTTGGTTGCCATTTTTCAGGCTGACAAGGCCTTGCCTCTCCCTCTCCTGATCTGTTTTTCCTTTTACTGTCTTGATTTTGCTTCTTGTCCTTTCCTTTCTCCATGTCAACATTAAGCTCGAGTTTCCTTCTATGTCAAGTGGTGACATTGTCCACTGCCCTGACTTCCTTTAATTTGGGCAGTTGTGTTAAACACACCAATCAGGACTCAGAGTGGGCACTGGGGGCTCCTGTTCTATCCCTTTGTGAAGATCCACTCTCTTGTAAATTGTGTCTTTGCAG
Seq C2 exon
TTTCAGGACCAATGCCACTTGTTCTTCAGGAGACTGAGCTAAACATTATGCGTCATGAGAAATGTTGTGAGATGCTCAAGAACAAGAATATATCCAAGAGTAAAATGGTCACGAGGGGGACCGTCTGTGGCTATAATGACCAAGGGAAGGATGCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206549:ENST00000460241:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCTCTTTACTGAGCCCA
R:
CTGACAGGCATCCTTCCCTTG
Band lengths:
343-1736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains