BtaINT0150387 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008342 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr15:29009696-29011264:-
Coord C1 exon
chr15:29011102-29011264
Coord A exon
chr15:29009869-29011101
Coord C2 exon
chr15:29009696-29009868
Length
1233 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
GCTCTCTGTGGCTTTGGCAGTAC
3' ss Score
4.62
Exon sequences
Seq C1 exon
ACTGTGGCCTGAGGGCCATGACCGGGCGGATCGTGGGAGGGGCGCGGGCCCCAGAAAGCAAGTGGCCATGGCAAGTCAGCCTGCAGTTCTCCCGTACCCACATTTGTGGGGGCACGCTGATCGATGCCCAGTGGATTCTCACCGCCGCCCACTGCTTCTTTAT
Seq A exon
GTAAGTGCCCTAGGGTGCTGTGATGTGACGCGGCTGAGGGTCTGGACGCTAGGAAGGGCTGAGGGCAGACTGACTTCTCTCTGTGGAGGGGGACTTTGGTTGTAAGCCTAGCCCCGAGGACTGGGAGGCACATGTGTGGTGAGGACCATGATTCGGTCCTGGGAGTGTGAGTTGGGGTTACTTATGCTGAGCCAGTGCAGAGTGAGAAAATACCATTGCTGGCTTCAGGGGAGAGAGAGGGGAAGGTAGACGGGAGGAATTGGGAGCCTGCCCTAAAGAACAGGGTGAAATAAAGAGGTCTGGGGCTTGTGTCTGCTTTCAAAACCTGGACGTTACAGGAGAGGAGCTGGAGACATCGGGAATGCTGTCCCAGGAACTGAGGGACTGGGGCTGTGGGCAGGGCAGTGCAGTCAGCTTTCAACAGTCACCAGCCAGGCTTGTCCTTCGAGTTGGTGGACAGGAAAGGGCTGGGAGACGAGGCCTCAAGGGCACCGGCTTCCCCAGCAGTGAGTCTTCAGTGGGTCACTTTGTCCTGTCGAAAGCCCCATTTCCGCTGAGAATACTACCACTGAGATGTGTTCTGTCCACTTCATTGGATCCTTGGTGGCATCCAGAGGAGACAGTGGGGCCAGTGGGGCCAGTGTTCCCAGAAGTCTTACTCATCTCCTCCCATTTTCTATTTTTAAAATGTTATCTATTTATTCATTTATGGCTCTGCTGGGTCTTCATTGCTGCACGTGGGCTTTCTCTAGTTTCCGCAAGTCGGGGCTACTCTCTAGTTGCGATGCATGGGCTTCTCATTGAGGTGGCTTCTCTTGTTGAGGAGCAGTGTTGGGGCTTCAATAGTTGTGGTGTGTGGAGTTGTGGTTCCCAGGCTCTAAAGCGCAGGCTCAACAGATATGGCACATGGGCTTAATTGTTCCTCGGCATGTGGGATCTTCCCGGACCAGGGATTGAACCTGTGTCTCCTGCATTGGTGGCTTTACCACTGAGCCACCAAGGAAGCCCCCATTTTCTATTGTAAGGTATAGAACCACCAGTTCAGAGCAGCTGTTTGAAAGTAGAGGATTGTTCTAGACCCCTGGGCTAAGATAGAGTGCCCCCTCCAGAGGTCATTTCATCCATCCTCCTGCCTCCAAGCTGGTGCTCTGGTTGAAGCTCCTTGTGTGCAGCAGATGTTGCCAAGACCTCTGCCAGATGGTAACTGGCCCATGCTCTCTGTGGCTTTGGCAG
Seq C2 exon
TACCCGGGAGAAGATTTTGGAGGGCTGGAAGGTGTACGTGGGCACCAACGATCTGCACCACCTGCCCGAGTCAGCCTCCGTCGCCCAGATCATCATCAACAGCAACTACTCAGATGATCAGGACGACTATGACATCGCCCTCATGCGGCTCTCCAAGCCCCTGACCCTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008342:ENSBTAT00000010989:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.5=9.1),PF0008921=Trypsin=PU(19.2=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(25.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGGCCATGACCGGG
R:
GGACAGGGTCAGGGGCTT
Band lengths:
327-1560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development