MmuINT0162673 @ mm9
Intron Retention
Gene
ENSMUSG00000037129 | Tmprss13
Description
transmembrane protease, serine 13 [Source:MGI Symbol;Acc:MGI:2682935]
Coordinates
chr9:45146339-45147490:+
Coord C1 exon
chr9:45146339-45146501
Coord A exon
chr9:45146502-45147317
Coord C2 exon
chr9:45147318-45147490
Length
816 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
ATACCCTATGGCTCTTGTAGGAC
3' ss Score
7.66
Exon sequences
Seq C1 exon
ACTGTGGTTTGAGAGCTATGACCGGGCGGATCGTGGGAGGGGCTCTGACCTCGGAGAGCAAGTGGCCCTGGCAAGTTAGCCTGCACTTCGGCACCACCCACATCTGTGGGGGCACACTCATCGATGCCCAGTGGGTGCTCACCGCTGCCCACTGTTTCTTTGT
Seq A exon
GTAAGTGCCTGAGGGTTCCTTGGTAAGATGCTGTTGGGGACTTGGAGCCACTAGGAAGGGCTTATAGACACTCTAGTCTATAACTAAGCTGAGTTCCCCAGGGTCAGGCAACTCAGCTACTGCTCAAAAGACTAAGTGTGAATGCCAGTTTGGTTCAGAGCTTAGGCCAAGGATGAAAAACAAGGTCCCGAGAAAAAGGAAGGCAGGCTGGAAGAAGACCTTTGGATCCTTTCCCTGGAGAGCAGATGAAAGGAAACTCCAGGCTCATTGCCACCTCCTGCAACCACAGCTGCAGAGCTAACAGCAGAAGAGTCTGACAATCAGGGATGCTGACTCAAGACCTGAGGGACGGGGACAGCATGAGGGTGTGGTACAGGTGGCTCCTAAGAGTTTCTAGCAGCCTTTGGGGAAGCACAGCACAGACCTTGTGGACACTGGCTCCTTGAGTAAAGAATTTTCATTATCTTGTCCTATCTAAATCTCCCTAGCTGATAGCATCTGTCCCACTGCCAAGCCTCCATACTTAGTGGCATGCAGATGAGGTAGCGGGGTGAATTACACACATAGAAATTGCTAATTCCAATGCTTTTTCACACTCTAAGGTACAGGCCAGTTCAGAACAATTTTGAGGAGATTGAGGGATGGTTTTGGGCTTCATAAGATAGAGGAGTCCTCCAGAGGCCATTTTCTCCATCCTCCTGTCTCCAGGCTGGCACTCCTGCTTTGCACCCCCCCCCCACCCTCGTCATGGGTAGCAGATGCAGTCAATGAATTCTGCCAGGTATATAACTAGACAATACCCTATGGCTCTTGTAG
Seq C2 exon
GACCCGGGAGAAGCTGCTGGAGGGGTGGAAGGTGTATGCAGGCACCAGCAACTTGCACCAGCTGCCCGAGGCTGCCTCTATCTCCCAGATCATCATCAACGGCAACTACACAGATGAACAGGATGACTATGACATTGCCCTCATCAGGCTGTCCAAGCCCCTGACCCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037129-Tmprss13:NM_001013373:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.5=9.1),PF0008921=Trypsin=PU(19.2=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(25.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGTTTGAGAGCTATGACCG
R:
TGACAGGGTCAGGGGCTTG
Band lengths:
334-1150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: