DreINT0165373 @ danRer10
Intron Retention
Gene
ENSDARG00000053315 | tmprss3a
Description
transmembrane protease, serine 3a [Source:ZFIN;Acc:ZDB-GENE-070912-70]
Coordinates
chr9:19749751-19750161:-
Coord C1 exon
chr9:19749996-19750161
Coord A exon
chr9:19749921-19749995
Coord C2 exon
chr9:19749751-19749920
Length
75 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
ATAGTCTGATTTCCATGCAGGAT
3' ss Score
7.81
Exon sequences
Seq C1 exon
CTTGTGGTTCAAGACCCAAGTTCAGCGCTCGTATAGTTGGTGGCAACCTGTCAGCTGAGGGTCAGTTCCCCTGGCAGGTCAGCCTACACTTCCAGAATGAGCACCTCTGTGGCGGATCCATCATAACGTCTCGCTGGATCCTCACTGCTGCCCACTGTGTGTACGG
Seq A exon
GTGAGTTAATGCTGTCCTCATCAATCCCCATTCACACAGTCATGTGTAAATGACCATAGTCTGATTTCCATGCAG
Seq C2 exon
GATTGCTTATCCTATGTATTGGATGGTCTATGCGGGATTGACCGAGCTGCCACTGAATGCAGTAAAGGCTTTCGCCGTGGAGAAGATCATTTATCACAGCCGCTACAGACCCAAAGGCCTGGACCATGATATTGCTCTGATGAAACTGGCGCAGCCCCTCACCTTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053315:ENSDART00000157653:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(41.7=44.6),PF0008921=Trypsin=PU(19.4=78.6)
A:
NA
C2:
PF0008921=Trypsin=FE(25.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACGTCTCGCTGGATCCTCA
R:
GCAATATCATGGTCCAGGCCT
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]