BtaINT0007175 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1ML28]
Coordinates
chr22:53262292-53263173:+
Coord C1 exon
chr22:53262292-53262455
Coord A exon
chr22:53262456-53263026
Coord C2 exon
chr22:53263027-53263173
Length
571 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTTTCTTTATCTTTATCTAGGGA
3' ss Score
8.78
Exon sequences
Seq C1 exon
ACGTACCACAAGCTTCTACACAAGAGCTTCAGGAGGCTGAGCTAAACATTCTTCGCTATGAGACTTGTAATGAGGTGCTCAGCGAAAAGTTGGAAAGTCAGTTTGATGTGGTCAAGGAGGGGACTGTCTGTGCTATCAGCTCCAAAGGAAAGGATGCCTGCCAG
Seq A exon
GTGAGTTCATGGGCCCTTTGCTGCCTTTGCATTTTAGCTGTCCTCCCAGATGTTCCTCATCCACAGGCGGTAGGACCTACATGATCTGGCAGTGCCTGTGTCACCTGTCTTCAAGTTGAGGGTTTAAGGGGACAAGCCACCAAGGCTCTCCTGGGCTGGTCTGACCTGATGCTTCAGGAGAGAGGTCCTGATGCTGCCTAGAGGGAGACAGGGGAGGAGGGGAGAGTCAGGCATGAAATACCAATAATACAAGTCATGTGTTATAGCCTCTTCTAAGTGACAGGCAATATAAACAGGTAAGGATTTTATTCATTACTAATATCTCAGAGTACATACATTTTCTTTGAGAATATTCAGTTTTTGGTATAGACTGTATTGATGACATACACAATTTGGGTAAATGTTATCAATTCTCAGATCTCATACACATGGAAACCTAGGGCTGCTGGAGCCCTAGTGGTGCCTGGGGAGCCCCATGCACGTCCATCTTCCCACTGCCTTGCATGGCTACTAGGCTGTTATGACGTTGTCCCTCTTCCATCACTGTGTTTGTTTCTTTATCTTTATCTAG
Seq C2 exon
GGAGATTCTGGGGGTCCCCTGGTCTGTGAATTTAATAATTCATGGGTCCAAGTGGGGATTGTGAGCTGGGGCATTGGCTGTGGTCGCAGCGGGTATCCAGGAGTTTACACAGAAGTGAGTTTCTACAAGGATTGGCTCATTGCTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037821:ENSBTAT00000054998:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAAGCTTCTACACAAGAGC
R:
GCAATGAGCCAATCCTTGTAGA
Band lengths:
303-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]