MmuINT0127517 @ mm10
Intron Retention
Gene
ENSMUSG00000032493 | Prss44
Description
protease, serine 44 [Source:MGI Symbol;Acc:MGI:1920586]
Coordinates
chr9:110816417-110817999:+
Coord C1 exon
chr9:110816417-110816571
Coord A exon
chr9:110816572-110817088
Coord C2 exon
chr9:110817089-110817999
Length
517 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ATTTCTTTCTCTTTCTCTAGGGA
3' ss Score
12.54
Exon sequences
Seq C1 exon
GTAGGTCGTCGAGAATACTGCAGGAGATTGAGCTGAATATTATCCGTCATGAGAAATGTAACCAGATTCTCAAGGACATCATGGGGAATATATTTACCCTGGTCCAGGAAGGGGGAGTCTGTGGCTATAATGAGAAAGGAGGAGATGCCTGCCAG
Seq A exon
GTCAGTTCGTGGGTCCCTTGCCACTCTGCCCCGCTGTCTTCCCGTCAGATGTCCCTAAGTCCCAGACATTGGGGCCTGGGTTGTGTCCCAGATCCTCCATTTACTGTTGTTCAGGCTAATGGAATGTCAGGTCAAGCCACCACAGCTCCTGAGCTAGCCTGACAGCATCCTCCAGGAGAAGAAAGCTGATGGCGTCCACAGTGGCTGGGGATGGGATGAATCGGGGAGGCAATAATACGAACTCCACGTTTTCAGGCCCTTCTGTGTGCTTGGGTAGTTTAGTTATTACTTCAGAAAAGGAACATAACATTGGGTTATATTCAGCTAACTTCTTTGAATAGGTAGAACTTTTCATTTGTTTAAAAAAAAAAAAAAAATCCCAAAATCTCATAGGAACCAGGACCAGGACCAGGGGATGCTGGGAGTCTGGTCTGTACCAATCTCTCCAGAGCCTTGGGGTGGAATCTATTGTACCATGAATCAATTTTGCTCCTGTCATTTCTTTCTCTTTCTCTAG
Seq C2 exon
GGAGATTCTGGGGGCCCCCTGGTCTGCGAATTTAATAAAACGTGGGTGCAGGTAGGGATCGTGAGCTGGGGTCTTGGCTGTGGCCGAATTGGATACCCTGGAGTTTATACAGAAGTGAGTTACTACAGAGACTGGATCATTAAAGAACTGAGTCGGGCTTCGTGTTGGAAGCTATCAGGCTTCCTCGTCTTAAGCGTGTGTCTGGTGCTTCACCTGGCCATCGTGGTGGCCCTATGATCCCCACAGCCCATGGTCCTCTTGTTTCTGAGCCTTCACTAGCTTCTCCCCTGACCGGATTTCCCCACCAATGCTTTCTTCAAATTCTACTTGGGATTGCTTGCCTTAGTGGAGCAGGAACACTGGAGGGAGTTTGGGGCTTGTAAGCATGTCCCGCCCTGGTGCTCTTTGTCATCTGCCTCAGATACCACTGTACTAAGGCTGTGCTTTACCTGGAGTGAAGGATTGTGGCCCACTTCCCGATAGAGGACTATCTGGCCTGCCAGGTGGAGGGAGATAACTCATCTTGTGAGTTATCTTGGAAAAAAGAACATCTCTAGAGGAGAGACTTCATCAGGACTGAGTGGGCACCGGGTCTAACTGATTTCATCAGGATTGAGTGGGCACTGGGTCTGTCTATTAGTCACTCTCACCAGAGACTCTAGAATACCAGTGAGATCTGTGGCCACACACAGACAGAGGAGGCATTTCCTGCAGAGGTGTGAGGCTGGTGGGAATCCATCTGTGAGTACAAAACTTTTGCTACACAACCTCCTGGGAGCAACCCTGTCTGGTGCCGCCTTCAACAGTTCCCACACAGCCACCTCCAGGGCCACCGCAAGTTGTGGTGGTGCAGTTTTGGAGAGGATAGATGTTAGATGTTGACTGAATAAACATGTCTCATGTGTTCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032493:ENSMUST00000098345:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(29.8=89.5)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=57.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGGGAGTCTGTGGCTAT
R:
CATTGGTGGGGAAATCCGGTC
Band lengths:
358-875
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types