RnoINT0118773 @ rn6
Intron Retention
Gene
ENSRNOG00000030073 | Prss44
Description
serine protease 44 [Source:RGD Symbol;Acc:1560940]
Coordinates
chr8:119086658-119088205:+
Coord C1 exon
chr8:119086658-119086812
Coord A exon
chr8:119086813-119087293
Coord C2 exon
chr8:119087294-119088205
Length
481 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ATTTGTTTCTCTTCCTCCAGGGA
3' ss Score
11.02
Exon sequences
Seq C1 exon
GTAGATCATCAAGGGTGCTTCGGGAGGTTGACCTAAGTATTATTCGTCACGAGAGATGTAATCAGATCCTTAAGGACATCACAGGAAGAATATTTACCCTAGTCCAGGAAGGGGGAGTCTGTGGCTATAATAAGAAAGGAGGAGATGCCTGCCAG
Seq A exon
GTCAGTTCATGGGTCCCTTGTTGCTCTACCCTGCTGTCCTTTCCCTGGATGTTCCTAAGTCCCAGACACTGGGGCCGCGATTGTGTTCCAGATCTTCCATTTACTGTTATCCAAGCTGATGGGATGTCAGGTCAAGCCACTACGGCTCCTGGGTTAGCCTGACAGGATCCTCCAGGAGAAGACAGCTGATGATGTCAGCAGAGGATGGGGGTGGGGTGGATCAGGGAGGAGGTAATACAAATTCCATGTTTTCAGCCCCTTCCGTGTGCTTGGGTAACTGATTCAGTCATGACTTCAGAAAGGGAGAACCATAGTGGTTTATACTCAGCTCACCTCTTTGAACAGGCAAAACTTTTCATTTGTTTAAAAAAAAAATCAATTCTGAAATCTCCTAGGGATGCAGGGCTCTCCAGAGCCTTGGGGTGGGACCTATTGTCCTATGAATCAATTTCGTTCCTGTCATTTGTTTCTCTTCCTCCAG
Seq C2 exon
GGAGATTCTGGGGGGCCCATGGTCTGCGAATTTAATAAGACATGGGTGCAGGTAGGGATCGTGAGCTGGGGCCTTGGCTGTGGTCGAATCGGATACCCTGGAATTTATACAGAAGTGAGTTACTACAGAGACTGGATCATTAAGGAACTGAGTCGAGCTTCGTGTTGGAAGTCATTAAGCTTCCTCTTCTTAAGCCTGTGCCTGGTGCTTCACCTGGGCATCCTGGTGACCCCATGATCTCTATACAGCCCATGGTCCTCTTGTTTCTGAGCCTCCACTAGGCTTCTCCTCAGACCTAATTTCCCTGCCAATGCTCTTTCTTCAAATTCTACTTGGGATTTGTGGAGCACAGCAGGGAGTTTGGGGCTTGTAAAATATCCGGCCCTGGTACCCTTTGTCATCTGCCTCAGCTACCACTGTATTAAGTCTGTGCTTTACCTGGAGCGAAGGAGTGTGGACCACTTCCGGGTAGAGGACTACCTGGCCTGCCAGTGGAGGGAGATAACTCGTCTCCTTGAGTTATCTTGGAGAAAGAACATCTCTAGAGGAGAGACTTCATCAGGATTGAACGGGCACTAGATGTAACTGGCTGCCAATAGCTCTTACCAGAGACTCTGACATACCCGTGAGATCTGTATACTCAGAGGAGGCGTTTCCTGCAGAGGTGCGTAGCTGGGACGTCTACATCTGGCTCAGTTGCGGTTTGCAGCATTTTCCCTGTGCCATGGTGGGAATCCATCCGTGAGCACAAAACTTTTGCTACACAAGCCTCCTGGGAGCAACAACCCTGATGGTGCCTGCTTCAACAGTTCCCTCACAGCCACTTCCGGGACCACCCTAAGTTGCGGCGGCGCAGTTTTGAAGAGGATAGATTTTAGACATGAACGGAATAAACGTGTCTTGTGTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030073:ENSRNOT00000048655:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=57.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATCAAGGGTGCTTCGGG
R:
ACCAGGCACAGGCTTAAGAAG
Band lengths:
358-839
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]