BtaINT0007203 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B9A9]
Coordinates
chr18:58194882-58204037:+
Coord C1 exon
chr18:58194882-58195064
Coord A exon
chr18:58195065-58203857
Coord C2 exon
chr18:58203858-58204037
Length
8793 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
AATTTTCTCTTCCACCCAAGGTC
3' ss Score
6.57
Exon sequences
Seq C1 exon
AGGAAACTAACCCAGAGCCCTCAGCAGATACACCTCCTCCTGGGCCCTGCAAGTCCCTAGCAACAGCCACAGATGCACTATGGGGAGAACACATCAGAAGGAGAACTGGTTTTGGACCAGGTTCAGGCTTTGGTAGCTACGGAAGGACTCTTCGGGGGCTCAAGCTGGTGAGCCTGATTCTGG
Seq A exon
GTGAGAATCCCCAGTGAGGGGTCTGTGGAGGGTCAGTGCAGAGGGAATGCATGCCAGTGTCCATATAGGGGATTTCCTTTGGGTTGAGTCACTGAGGAATCTGGGTGTTAGTAGTGGGGCCTTTGATTAAGGCTTAAGCCGAAGTGTTTAATGATCAGTGGTTCTGTTGGTCAGGGTTTAGGGTACATGTGTTAAGCTCTGCAAGACTCAGTAATTGAAAACTGGATGGAAGGTGTGAAACTAATGAGCACGGTTTCTCCCCTAGGTTAGCAATTTAATATCCAGCTCCTGTTCTTGGACAGCAAGGAGATCAAACCAGTGACTCCTAAAGGAAATCAGCCCACTGCTCAGCAGGCTCTTATTGACTTTTAAGAACTCTGTTCTGGATATCAGTTCTTTATCAGTATAGGGCTTATGGGATGAATGTGTTGAGATACTTTTGAGAGTCCCTGCCCCCCCACTGTCCCCCCCACCCCCCACTGGCTTTTTTTTTTTTTTTTGGCCTATGGACCTCTAAGTGTTCCAGCATTATTTGCTGAAAAGTCTATCTTTCTTCATTTTGAATAAACTTTTTACCTCTGTGAAACACTTGAGTGTAATTGACTTATGTGGGTCTTTTGGGATCTCTATTGTATTCCTTTGTCCTGTATTTTCTCCTTTCACCAATACTACTGAAGGTTTATAAATCTTGAAATCTGTTGATGTGAGCTCTATATGTTGGTTCTTTTTGGTCAAATTTTTTTGCTATTTTCAGTGGAAAAATCTGGCAAATATTACCTTTGTTGTCCCTTTGATAGCCTAGACATGATGTTATTAGAAAGGGACTTCGATTCGGAGGTGTCTTTTCCAATATGGATAGCCCTTGTTTAATGAGGAAAACAGACTGACCTAAAAGAAGGTCAATATCTCAAATACCTAATCAGTACTCCTCAAAATGAAGACAGGAAAAAGAGAAAAGGGTGAGGAATGGTCACAGAACAAGGGAATTCAGGAAAACATGATGTTTAAAGGCAGTATTCCCTGGGTTGAATCCTGAGACAGAAAGAGGACAGTAGTGGAAAAAGTTGTGAAATCCAAATAGAAACTAATTTAGTTGAGTGTCATAGCAATGTTAATATCTCAATTTGACAAACGTATCATGGTTACATAGGGGCTACCCAGGTGGCTCACTGGGTAAAGAATCTGTCTGCAGTGGAAGAGATGAAGGAGGCTTGAGTCTGATCCTTGAGTCAGGAAGCTCCCCTGGAGGAGGACATGACAACCCACCCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTAGCAGGATGCAGTTCATAGGGCCGTGAAGAGTCAGATGCAACTGAGCACACACACACCAAGGTTATATGAAATATTCACACGAGAGGAAGTCAAATGAAGGTATATATGCATTCTTTGTAGTACTTTGTGGCTTTTGTGTAAATCTAAAGTTTTCTCCAAATAAAAATTTAAAATAGGTATTTGTAGTTGTTCAGTTGCCCAGTCACGTCTGACTCTTTGCGACCCCATAGACTGCAGCACATCAGGCCTCCCTATCTCTCTTCATCTCCCAGAGTTTGCCCCAGTTCACGTCCATTGCATCGGTGATGCCATCCGGCCATCTCATCCTCTGGCACTCTCTTCTCCTGTCCTCAATATTTCCCAGCATCAGGGACTTTTCCAGTGAGTCTGCTGTTCACATCAGACGACCATAATACTGGAGCTTCAGCTTCAGCATCAGTCCTTCCAAAGTGTATTCAGGGTTGAATTTCCCTTAATATTGACTGATTTGTTCTCCTTGCAGTCCAAGGGGCTTCCAGGAGTCTTCTCTAGCACCATAGTTCGAAGCCATCAAATTTTTGGTGATCTGCCTTCTCTATGGGCAAGCTCTCACACCCATATGTGACCACTGGGAAGACCACAACCTTGACTATATGGACCTTTGTCAGCAGAGTAATGTTGTTGCTTTTCAAAACAATGTCTAGGTTTGTCATAGCTAAAATAGGTATAATAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTACGTCAAGGCTGTATATCGTCACCCTGTTTATTTAACTTATATGCAGAATACATCATGAGAAACGCTGGACTGGAAGAAACACAAGCTGGAATCAGGATTGCCGGGAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGCAGAAAGTGAGAGGAACTCAAAAGCCTCTTGATGAAAGTGAAAGTGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACACTCAGAAAATGAAGATCATGGCATCCTCTGAGTGATATGGCTGAAAAGTACATACTGAGAGAAATCTGTCATCATTTCCATCACCCTAGAAAGTTATATTTCCCAGTGCAGAAAAATAAGCAATTATTTATTTGGGACTTGAATGAACAAGCTAATGGACTAATCAGTTTTTTGTCACTGAAGGGAGTAAGCCACTGGAAGGCAGTTCTAAAGAACATAGCTGTCTTCTAAATTGTGTGTGATTAGAGACTCAATATAAACAGGGAAAAGCAAAATGAAAGAGGATCCTCAGAAAGGACAGGAATTGCAGTTTCTAAGTTGTTCAGTCATTGAGTCATGTCACCTCTTTGTGACCCCATGGATTGTAGCACGCCAGGCTTCCCTGTCCTTCACTATCTCCCAGAGTTTGCTCAAATTCCTGTCGAGTCAGTGATGCTATCTAACCATCTCATCCTCTGCCTCCCCCTTCTCTTACCCTCAATCTTTCCCAGCATCAGGGTCTTTTCCAATGAGTCATCTCTCTGCATTGGGTGGCCAAAGTATTGGAGGATCAGCGTCAGTCCTTCTAATGAATATTCAGGGTTGATTTCCTTTATGATTGACTGGTTTCATGTCTAAGAATGGAGGAAAACATAAGAGATGGGAGGTGACATTCTTAAAGGATGTGGTGAAAAAACTTTGTCTAAAGGGCAAAGCTCTCAAAACTCTTGAAAGCTGCTGCCATTTCAAAAATTCCAGCTTCACTGTTACCTGCTGAACTGAGATGTGCTTTCTCTTCTTTCTCCCTCTTCTGAGAGTAGGGCTCTTGGCCTCTCACTATCCTGAGTGCATGCATGCTAAGTCGATTCAGTCGTGTCCGATTTTTTGTGATCCTACGGACTATAGCTCACTAGGCTCCTCTGTCCATGGAATTTTCCAGGCAAGAATACTGGAGTGGATTGCCATGCCCTCCTCAGGGGATTTTCCAGACCCAGGGATTGAACCCAGGACTTCCACATTGCAGGCGGATTCTTTACTGTCTGAGCGACCAGGGAAGCCCTACTTTCCCTTAATTTCCTAACTATCCTGTAGTTATCCACCTATCCAAGTTATAAACATTTGGGTCTTATTCACAGGAAAGGAAATGGAAATTTTCCATACTGTGGCTGTCTTGGAATTCAATCTGAAATGTTGGGTTATTGGATAATTCACTCCTTCAGATATATTTTAAAGCAACAACATTGTACAAGACACTGTACTCCACACTGAAGATAAATCAGAGACCAACACGGGCAAGGGAATACCCCTTATGGATCTTACAGAATAGTGAAGAAGAGACAATCAATAGATACGATGTCACCAAGTGATAAGTCCTTTGAAGAAAAAGCCTAGTAATAATTTATTGGGTGTCCCAGGGGGAAAGTGAAAGTCACTCAGTCATGTCTGATGTTACTGGAGTGGGTAGTCTATCCCTTCTCCAGGGGATCTTCCCGACCCAGGAATGGAACTGGGGTCTCTTGCATTGCAGGTGGATGCTTAACCAACTGAGCTATCAGGGAAGCTCCAGGTTGAGCTAGTGGTAAAGAACCCACCTGCCAATACAGGAGACATGCTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCTACTCTGTGCGACCCCATAGACTGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAAGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCTGACTCTTAGCGACCCCATGGACAGCAGCCTACCAGGCTCCTCTGCCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTGCCTTCTCCGGCAGGAGACATGAAACTCCAGTTAAATCCATGGGTGGGGAAAATCTCCTGGAGGAGAGCAAAGCAAGGAGTGGAACTCCACTGAAGCAACTTAGCACACATATGCATGCTTTAGTAATAATAGGGAAGGCTCTCCACCCCAAGCTTTTCTGGATACTATTTGAGCCAACACTGAAATACTAAAGGAAGTCCCCCATCATAATATTGGTAACTAGAGAATATTCCAGGACTGTTTCTTTTAACCATGGCCTGGTTTCACAACAGCCTGATTCACACTTAATTTTCACATTCTTTGCCGTAAATCTTGGGTTACTGTCCCCATCACCACCCTTCTGTTATGGCAGGATGGATTCAGGTTGAGCTTTTCCCATTGACTCCACACCATTAATGGCCTTACTTCTGGTGGCCTTTTCCTGAGCCCCAACCCCCAGTCACAACGTGGGTAGCCCCTGCCACTCTTTTCCCTCCTTAATGGCCAGCCCCATACTGTAGCAGTGTCTGGACATCTTTTTTCTCTTCTTAAAATCAGCTTCCTGCAAGCTATTTTCCCTCCGGAAGCTCTCCTTGGAGTCCGTTTACCCAATGTATTTTCTTTTCCCTTTCTGGGAGTGTGTTCTTCGCTGCCAAGCCAACCAGTGAACTCCTACCTCTCTGGAATTTTTTTTTTTTTTCATACAAAGTATAAAAATACGGATTTATACAAAAATTTATACAATTTACGTATGTAATTTATACAAATTGTATATTGTATATAATTGTATATAATTTTTACAGAAATTATATACAATTTATACAAAATACGGATAATACATGCCGAAGCCGTATTTACTTCCATGACTAGCCTTCTGAAAGCACCTTAGCCGGCATTATTTTTGCCTCATGAAGCTTGAGACTGAAAACGTACCTATTTTCTGCAAGAGTCGAAATGTGAGGAAATGAGAGAATTTCAGTGGCTCCTCACCCTCCAGGCCATCCCAGCTCCTGGCCTCCAAATCCATCCCTGGACTTTCCGTACGTCAGATGTGCCAACATGGCCGTCCCCTTGGGGGCCGTTGTGATCTGGGCGCAGACATATTGCCTGTCTAGGACGTAACGGAAGTTGGTTCATTAGCTCCAGTGACAGCTCAGATCCACCTCGGCATCCGTAGACAGGTCTAGACTTCAAAGCAGTTCACCGAAGTAGGAGGGCGTTTAGCTTCCCGTCGGTCTGGGGAAAATCTGTTTAGTGTGTGATTTTTGTGCCTGGATTTCCCCCCACCCCCCCCCCTTTTTTTTTGTCGTCACAGTAGTGGTATTGTTTCGCCCAGGGTGATACGTGGACTTGGTGCTGTCTGGACCCTTGGGATTATCTCCACAGGGCAGAGGCATACGGCAGAAGTGCCGAGGTGGTTATATGTAAGGGGAACCAGGTGGGTACTGGATTTGGGAACCAGACGCGGAGTTAGTCTGTGGTTTGCGTTGGGGGTGTCCTGGGGGTCAGTATGATTAGATTCTGTAGAGATCAGTGCTCTTCTTCCAGTTTTCAAGGCTTGGGGTTCTGTGGATCACTCCGATTGCAGGGTGTACAGGTGGCATTGACGACGATCGCAGTGTCCGATTCAGATTGGGGATTTAATTCGGGGCTCAGTGATGGCGGGGTGTGCCTGGGTCATCTCATAAGGGTGTCAGTACCAGGTTTCGGGTTCATAAAGAAGCGACAGAAGACCGTACATCCCAGGGCAATAGTTCCAAACCATCTATATTTTATCTTTTGTGTACGTGTGTTTTCTTTTTAAATTCATTGAAGTATAATTGGTTTACAACATTGTGAATTTCTACTGTATAGCAAGGTGATTCAGATATATATACACATTCTCTTTAATATTCTTTTTCATTATGATTTATGACAGGACATTGAATATAGCTCCCTGTGATGTACTGTAGGACCTTGGTTAGCCTAGTTGTTTAGCTTTTAATCGAGAAGTTGACTATAGAAGGAGAGACTGAGCCAGCAATGCCAATCTGTCTTATATTGTCTGTGCGGCTTTTGCACTGCAAAGATAGAGTATATCATGACAGAGACATTTTGGCTTGCAAATTTGAAAATCCGTGTGTACTTTTTGCAGAAAATATTTGTCAACATTTGCACTCACCTCCTAATAACGATATATTGCAACAGCACCATTACTTTGGAGAAGGAAATGGCAACCCGCTCCAGTATTCTTGCCAGGAGAATTCCATGGACAGAGGAGCCTCGCAGGCTACAGTCCCTGGGATGCAAAAAGTAGGACACGACTGAGCAACTAACACACACCGTTACTTACCTCCCTGACATACGTGAAAACTTTGTTCTTTGCTAACAGAATCTTCATTTTGCTTAATTATCTGGAAAGATGCCTTCTGGCAAGGTCATCCATATTCCAATTTATTGGGAAGTCCTGACTGGTCTTAGTCAATCATGTGGTTTGAGTTCCTATTGCTAGTGATTGAGTTAGTACTAAGAAAAGAGCTTACGTATATGGGGCGGTTCTAACCAGCTATGTATGTAGAAATGTGCTTTGGGGTTTCTAGAGAAGCATTTTTTTCTTTTAAAGTAGTAAGGCCTTGGATCTCTTTTCTCATATTGATCATGATATTGTTGAAAAATTTTGGCCCTGTTTTCTAATGTTAACTTATTCTTTCAGGTTTTCTTTATGGTGTTGTAATTATTCATTCCTCATCATTATTATAGTTTTGCCTGTCTTCAACTGTATATATTTTTATACCACATCTTCCTTATCTGTTCATCTATTGATGGACACTTGGGTTGCATCTGTGTCTTGGCTATTGTAAGTAGTTCTGCTATGAACATTGGGATGCCTAAAGCTTTTCAAATTAGAGTTTTCTCCACATCATGCACTTTTTTTTAATGTCAGACTCAATATTTGTGAGACTCAGTTATGTTCTTGCACATAGATGTACTCCCCCCCCCCACCGTGTAACAGGATTATGCAAATATATAAATATCCACATAGCAAATATTTTGTGGTTTGCATGCCACCGTTCTCTCATGTATAAGTCTTTATTTTTGTTTTATTATCCTTGAAAGATGTAAAAGGTATTCTTAGCATGAAAGCTGAGCAAAGACTGTTGTTTTTCCATAGCATTCTATTGTTTGACTATATGATTTTCCGACTACTTGTGAAATTTGTGTTGCTTGCATTTCGGTTTGTTATGAATAATGTTACTATGGAGATTCATGACAGTGTCCTCCGGTTTAACCCATATTTTTGGAGGGAGGCCCCAGATTTTTGGAGGGATGTATTTCTTAGATGTATTCTTCAGACTGAAGTTGCTTCTGGCTTGGTGAACATGTGGAGATGCAGGGAGAGTGACCCTCCTGTAGGGGGCACTTCTCACCCTTCCACACTTACCCTGTCCTGGGCAGGCACCTCTTCCATCTGCCTGTTCCTGAGTTACATCTTTTTGTAAGTAAATATAATACCTAAAATGTTTCTCTGAGTTCCGGGAGCCGTTCTAGCATATTTTTGTTTGTTTTGTTTTTGGCTGTGCCACACAGCATGTGGGATCTTAGTTTCCTGACCAGGGATGGAACCCACACCCCCTGCAGTAGAAGCACAGAGTCCTAGCCACTGGACCTCCACAAAATTCCCTCCTCTAGCAAATGAATCAACCCAAGGAGGGGTCATTGGACCCTGCGCTCTGTGGCCAGTTGCTTGGAAGCACAGGTGACAGACTGGACTTGTGTTTGCACTTGAAGCAGAGGGTAGAGGCCAGTCTCACAGGATGGAGGCTTTAACTCATGAAATATGACATTATCTCCAGGTACATAGTGGCGGAATTGAGTTGAAGTGTAGGACATCCAGCTGGTGGTGTAGAATTGTTTCCTGATGTGTTAGAAAAAGAACTACGTATCAAATTGGTGTCAGAATCCCACCTTGTTGTGGATGAGTTTCTTGTTATTACACTTCCCTCTTCTGATAGCACCACAAACTGTGTTTTAAGAGAGTTGTTAGTGTTCATTATGACACTGGAGAGTACGTATGACATATAATTTTTGTTTGTTAAATTCTTATGTTAATTAGTACTTTTATACGTTCTTCTGACAACGTAGTCTTAGAGCACTTCAACTTCATTTATATACGATTATTTTGTATTTTAATTTCTTATGTATTTAAAACCTTCTAAGATATTACCACTATTTTTTTATAACAAAGCATTTCTGCTTTGAGCAGTATGGTAGTTTTCAAAATTAAGTGCATGTAGTCACGGGATGTATACAAATTTTTGAGTAGGTCCCTGACCGCACATGGTTTAGAGGATAAGCAGCGCCTATCCCCCCATGTGGTCCCTTCTGTATAACTGAAGTGCCTGCGATTCTCCTGCTCCCGAGGCCTGCTGCTGGGTGAATCTCTTGTCCCTCATCTCATTTGACAGTCATCCCACTTAAAGTTTGTGGAACAAAGGAACACTACCTCCGTCACAGTCAGAAGCTTAGGCTTTTTTGGCCAGAAGCATAAAATATTCTGGGGCTACCAGTAAAGGGACACTCGGCAATGCTGTGGGCATTGGGTTAAGATGAGAACCCAGGATTAGCAATATCCTCTGGGCCCAGAGGAAATGTACCCTCAGCTTGAATTTTCTCTTCCACCCAAG
Seq C2 exon
GTCCTGAGTCCCCAGGAGCAAAAGAATCAGTCAAAAGAGGAAGAAGTTATAGGATTTGGTAGCAGCATTTTCTGGGGATATGCTTGGTTGAAGACAAGTTTCAGAACAGAAATTGAGAGCAGATCCACGTGATACATCGACAGTGTTTTCAGAGAACAGAGGAAAATGATCCAAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037906:ENSBTAT00000025840:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development