BtaINT0007383 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B9E7]
Coordinates
chr8:8611199-8613363:+
Coord C1 exon
chr8:8611199-8611478
Coord A exon
chr8:8611479-8613220
Coord C2 exon
chr8:8613221-8613363
Length
1742 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TAGCTTCCTCATTTTGCTAGACC
3' ss Score
4.01
Exon sequences
Seq C1 exon
TTATTATATTCATTCTTTAGGTTAGAAATGACCTTGGAAAACATCACTGTGGTCATGGGATCCAGAACACTCAAGGACTCCCGCCTGGAGAGAAAGCAAGTGCAGAAGATAATTATTCACAAAGATTATGAACCACCTCACCTGGACAGCGACCTCTCCCTGTTGCTGCTTGCCACACCAGTACAATTCAATAACTTCAAAATGCCCATCTGCCTGCAGAAGAAGGAGAAGATCTGGGGCCGCTGCTGGATGACAGAGTGGGTGATGGCTCCTTCATATG
Seq A exon
GTATGTACCTTCCCTTCTGAACCCAGAAAATTTATGCCTAAATGTCTAGCCCCAGGCTAGACAGCATGATGCTTTGGAAGACTCAGGTCGGAATTTTGGCCTCACCACTGTCGCTTTGTGATTCCGACCTAGCTCCCCCAGATTATTTTCTTTCATGTTTTCTCATCTGTAGAATGACAAGACTGCAGCCTTCAAATACCCTGTGTGGATTAAATTAAGTGAGATTATACATGTAAGGGCCTTACCATCGATACAAGCCTGGAACATCAGTTCAGTTCAGTTCAGTCGTGTCCGACTTTTTGCGACCCCATGAATCACAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTTACTTAAACTCATGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGGGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTCAGCATCAGTCCCTCCAATGGAACATAGACGAACCTAAATGCACGGGAGTGATGGTGATTTCTTTCGGAGCCCAGAAGCACTGTAGAAAGAAAGCTTGGATTCTTCCCTCCTAGGTGGTTTTACAAGCACATCTCCCCAAATGTTTATCATCAGATGAAGCTCATGTAGACTTCCCTGGTGGCTCAGATGGTAAAGAACCCACCTGCCAATGCAGGGGACAAAGGAGATGCGGGTTTGGTCCCTGGGTAGGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGAAGAATCCCATGCACAGAGGAGCCTGGTGGGCTCCACGCGGTTGCAAATAGTTGGACACGACGGAGTGGCAACACTTTCACTAGACCACCATCCTGAGACGACTCTGAGACAGTGATTCCCCAAGCAAGCACAGTCCTCCGCTACCTCCAGGCTGACTAGACAGGGATGCCGGAAGGCGATGAGCAGGATCCTCTTGGATCCGGGTTGTTTCTTTCCTTCGAGATGGCACCTTTAGGTATGCCATCCTCCTGGCCTCTCCACTGGCCTGGCAGAGGTGGGTACAGAAGTTAGGCTGTTATGAACCTCTGCACAAGGCAAACCTGGCTGTGAAGAGATGGTGGGGTCACTGAGAAAGCTCTTTCCATACTCACCTGGCAGAGGCTGGGGTGAGGGTTTGGTAGGCTGCTTCCAGAGGGAGTGAGCTTCCCAATGGGAAGCAGAGAAATAAGCAGAGATGGAGAAACCACTCCTGGGAGATGGTGGAGAGGAGATTGAGTGGGCATTGGGTTAGGTCACTCTAAGTCTGTGATGGTCTGAGTGTCTACATGCTTGCCAGGGCCTCCACCCTCGTCACTTGTGGGTCCATCCCTCTCCGTGGTGGAGCAGTGCTCATCCTTACTCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTTGTCTGACTCTGTGCAACCCCAGAAACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCAATGCAGGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCTGACTCTTAGCAACCCCATGGACTGCAGCCTGCCAGGCTCCTCCGCCCATGGGATTTTCCAGGCAAGAGGACTGGAGTGGGGTGCCACTGCCTTCTCCGCATCCTCACTCTAGCTTCCTCATTTTGCTAG
Seq C2 exon
ACCGAAAGGACAACTTCAACATGTACCTGCAGAAGCTGAGAGTGGTGCAGATTACCTGGAGAGACTGCAGCCAGAGGGTAGACCACCTCTCCAGGAACATGCTTTGCGCCTGGCAAGAACTGGGCACCAAAGGCAACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038291:ENSBTAT00000055085:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(52.1=98.7)
A:
NA
C2:
PF0008921=Trypsin=FE(32.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGTGGTCATGGGATCCA
R:
CGCAAAGCATGTTCCTGGAGA
Band lengths:
345-2087
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]