MmuINT0127538 @ mm10
Intron Retention
Gene
ENSMUSG00000052099 | Prss51
Description
protease, serine 51 [Source:MGI Symbol;Acc:MGI:1921465]
Coordinates
chr14:64095910-64097194:+
Coord C1 exon
chr14:64095910-64096169
Coord A exon
chr14:64096170-64097051
Coord C2 exon
chr14:64097052-64097194
Length
882 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
AGGCTCGCTTCTTTTGCCAGGTT
3' ss Score
6.35
Exon sequences
Seq C1 exon
ATTAGAACTGGTAGCAGTCAATGTCACTGTGGTCATGGGAATCAAGACTTTCAGTGACACCAACTTAGAGAGAAAACAAGTGCAGAAGATCATTGCTCACAGAGACTACAAACCGCCCGACCTTGACAGCGACCTCTGCCTGCTCCTACTTGCCACGCCAATCCAATTCAATAAAGACAAAATGCCCATCTGCCTGCCACAGAGGGAGAACTCCTGGGACCGGTGCTGGATGTCAGAGTGGGCATATACTCATGGCCATG
Seq A exon
GTATGTGCCTGGCCTTCAGGCCAGGATGAAGCTCACATATAGGTTGCCCTCTGCTGAGCAAAATGGTGGTTTAGATGAGGGAGAACTCAGGTTTGAGTCTGGGGAGTACCTTCTTTTATTACCTTTTCCCATCCATAGAACGACAGCAATGCCCCTCAGTTAAGTCAAGTAGACGAAATGGATGAAATTACATAGATAAACACATGGGGTCTAGAAGAAGCTCAGAACATGGAAATAACGGTCATTTTTATGGATTCCATAAAATCATTTGGCTTGTTCATCTGTTTGCCTCACATATAGTCCACCATTTGTTGAGATATCCAACCCGGTGGCTTCCCTGGAGCGTTGAGTATTGGTGGCTTGGCTCCTTTCCTGCAGAGCACCGGGCTGGTCACTTATGGAAGACTTCTGAGAAGGAAAGAATGAAGAGAAAAGCCAGGATTTCCTTTAGCACTGTGGTTATTTGCTCCCTCCAAGGTGGCACACCCTGATGTGCGCTCTCTTCCAAGTGTCTCCATTTGGCTTGCCAAAGACAAGATGTGGGAAACTGTTGCCAAAGCCCTTGGGTTGCTCTAAACTTTGACACAAGGACAAACAATAGCATCAGAGCCAGACTGGTGCCACAGAGAGATCTCCCCTATAGGGTAAGGGACTGGGTTGCTTCTGGAGAGAGCCTGCATCCTCTAGTCAGATGCACTGTAGAGGGACTACTCATTTACAGATACCTAGATGACGCAGAGCAGGGTCTTGCACTAGGGGACTTGTGAACCACCAGACTTCCACACTGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCACTCTCAGAGGCCAATTCATGCTCATTTTCAGGCTCGCTTCTTTTGCCAG
Seq C2 exon
GTTCAGCCAAAGGCTCAAACATGCACCTGAAGAAGCTCAGGGTGGTTCAGATTAGCTGGAGGACATGTGCCAAGAGGGTGACTCAGCTCTCCAGGAACATGCTTTGTGCTTGGAAGGAAGTGGGCACCAACGGCAAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052099:ENSMUST00000063785:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(79.6=97.4),PF150831=Colipase-like=WD(100=88.2)
A:
NA
C2:
PF0008921=Trypsin=FE(27.6=100),PF108923=DUF2688=PU(85.1=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCAATGTCACTGTGGTCA
R:
TTCCTGGAGAGCTGAGTCACC
Band lengths:
344-1226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types