RnoINT0081668 @ rn6
Intron Retention
Gene
ENSRNOG00000047637 | LOC100910401
Description
serine protease 55-like [Source:RGD Symbol;Acc:6498506]
Coordinates
chr15:47457809-47459078:+
Coord C1 exon
chr15:47457809-47458068
Coord A exon
chr15:47458069-47458935
Coord C2 exon
chr15:47458936-47459078
Length
867 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGC
5' ss Score
7.14
3' ss Seq
TAGCTTCCTTCTCTTGTCAGGTT
3' ss Score
9.07
Exon sequences
Seq C1 exon
ATTAGAACTGGTAGCAGTGAACATCACTGTGGTCCTGGGAATCAAGACTTTCAGCGACATCAACTTGGAGAGAAAACTAGTACAGAAGATCATCACTCACAAAGACTACAAGCCACCCCACCTTGACAGCGACCTTTGCCTGCTCCTCCTTGCCACGCCAATCGAATTCAACAAAGTCAAAATGCCCATCTGCCTGCCACAGAGGGAGAGCACCTGGGACAGGTGCTGGATGGCAGAGTGGGCATACGCCCATGGCCATG
Seq A exon
GTATGCACTTTGCCTTCATGCCAGTGTGGGCCTCCTGTGTAGGCTGCCTTCTGCTGAGCAGAATGGTGGTTCAGATGGGGAAGAACTGGGCTTTGAATGTGGGGGGGCTTCTTTTATTACTTTTCCCATCAATAGAATACCAGCAATGCCTACCCCAGCTAAGTCATGTAGATGAAATGGATGAAATTATGTAGATAAACACAGGGGCATAAAAGAATCTCAAAACTTGAAAATAATGGTCACTTTTATGGATTCCATAAAATTGTTTGACTTGCTCGTCTGTTTGCTTCACATATGTAGTCCACCATTTGTTGATAAAAATCAACCCGGTGGCTTACCCAGAGTAGTGGGTATTGGTGACTCGGCTCCTTTTTCTGCTGAGCACCAGGCTGGTCACCCGTGGAAGACTCCAGAGAGGGAAAGAATGGAGAGAAAGCCAGGATTTCCTCTAGCACTGTGGTTATTCGCCCCCTACAAGATGGCAACCCTGATATGTGCTCTCTTCCAAGTGTTTCCATTCTGTTTGCCAAAGGCAAGATGTGGGCCACTGTTGCCAAAGCACTTTGGCTGCTCTAAACTCTGACACAAGGACAAAGGGTGGCTTCAGAGCAAAGCTGGTGCCACAGAGAATCTCCCCCATACGGTGAGGGACTGGGTTGCTTCTGGAGAGAGCCTGCATCCTCTAGGCAGATCACCGTAGAGGGACTACTCGCTGAGAGGTACCTAGATGACACAGAGCAGAATCTTACACTAAACCATCCACACGAGGGGACCTGTGAATCACTAGACTTCCACACTGTGTGTGGGTGGGTCACCCTTGGCAGGCAACGCATGCTCATTCTCAGGCTAGCTTCCTTCTCTTGTCAG
Seq C2 exon
GTTCAGCCAAAGGCTTAAACATGCACCTTAAGAAGCTGAGGGTGGTTCAGATTAGCTGGAGGACATGTGCCAAGAGGGTGACTCAGCTCTCCAGGAACATGCTTTGTGCCTGGAAGGAAGCAGGCACCAACGGCAAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047637:ENSRNOT00000075276:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(47.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(25.5=100),PF108923=DUF2688=PU(85.1=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCACTGTGGTCCTGGGAA
R:
AGCATGTTCCTGGAGAGCTGA
Band lengths:
343-1210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]