HsaINT1028249 @ hg38
Intron Retention
Gene
ENSG00000253649 | PRSS51
Description
protease, serine 51 [Source:HGNC Symbol;Acc:HGNC:37321]
Coordinates
chr8:10496600-10497772:-
Coord C1 exon
chr8:10497712-10497772
Coord A exon
chr8:10496778-10497711
Coord C2 exon
chr8:10496600-10496777
Length
934 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
CAGCTTTCTCCCTTTGTCAGACC
3' ss Score
6.31
Exon sequences
Seq C1 exon
GAGGAGGAGAGGACCTGGGACTGGTGTTGGATGGCACAGTGGGTAACGACCAATGGGTATG
Seq A exon
GTACGTGCCCTCTTTTCAGAACTCATAGAAAGCCCCAATGTAGGGTACCCTAGGCTAGAGAGCATGATGCTTTGGGTGCGGTAATGCTTGGGTCTGAACTGTGGTTTTAACTCTCTTGAGCTCCTTCACCTTCCTCACCTTCAGTTTTCTCATCTGCAGAATGCCAGGAACACCTCCTCAAAAAGGTATGGGGATTAAATTAAATGAGGTCCCCAGTAAAAGCCTAGGACATAGAAGAATCTCAAAATATGAGAGCGATGATAATTTTTGTGGTGCCAAAAGCATGATAAGCCAGTTTGCATCTTCCCGCCTGTGGCTCTTTCACGATGGCCATCTCCCCATCTATTGGCCACCCCATGTAAAACACCATCCCAAGATAGCTCTGAGCCAGTGATTCTCCAACCAAGCTCCATCCTTTTCCCTGCAAGGCACCAGGCTGCCTGGCCAGGGAAGATCTCTGGGAGGGTGGGAGTGTTGGGGGGAGAAGGCCAAGAGTGCCCCTGGCATTGTGGTCAGTTCCTTCCTACAAGGTGGCATGACCAGATGTGTCTTCTTTTTGGGTTCTCCATTTGGGTTGGTGAAGACACTGGACAACACCAATTCAAAGGTTGGGCTGCTCTGATCCTCTGCATGGGGCAAAGCCTGGCTGTGAAGAGATGGTGGGGCCAGGGAGGACCTTCATTCCAGGCTGGGGCTTTTGTGGGCTGTTTCTGGAGAGAGTGAGCTTCCCACAGGAAGCACATTTAGTGGAGGAACTTCTTGTTGGGGCTGTTGGAGTGGAGACTGAAGTCATCCCAGGCCTCTATGCCCTGTGAATTTGTCATCTGCTGGACGTTGGTGGCCTCCCAGGCTTCCACGCTGATCGCGTGTGGGCTGTTCACTGTTGCCGGCTGATGCAGTGCTCACTCTCACACCAGCTTTCTCCCTTTGTCAG
Seq C2 exon
ACCAATATGATGACTTAAACATGCACCTGGAAAAGCTGAGAGTGGTGCAGATTAGCCGGAAAGAATGTGCCAAGAGGATAAACCAGCTGTCCAGGAACATGATTTGTGCTTGGAACGAACCAGGCACCAATGGTATCTTCAAGGTACTCACCCCTGCCCAGCCTCCTCCTCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000253649:ENST00000636217:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(8.5=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAGAGGACCTGGGA
R:
CTGGAGGGAGGAGGAGGCT
Band lengths:
239-1173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains