BtaINT0007443 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101240201-101241459:+
Coord C1 exon
chr5:101240201-101240254
Coord A exon
chr5:101240255-101241309
Coord C2 exon
chr5:101241310-101241459
Length
1055 bp
Sequences
Splice sites
5' ss Seq
AAAATGAAT
5' ss Score
-7.42
3' ss Seq
TAATTATATCCTCCTTACAGGTA
3' ss Score
10.36
Exon sequences
Seq C1 exon
GTGATTATTTTCATTTTTCAGTTATTTTCTGAATTAAAAAAATTTAATAATAAA
Seq A exon
ATGAATATATTTTACTTTAGAAATAAAATTTAAAATATAGAAACACTATAAAAAGGATTTTAAAAAGTACTAAAATGAATCTAGTATTCTTATTTTTAAAATTAGCTTCCCCATCTTTGGTTGATGGAAGAAAGTTGGTAGCCATTTGCTCTGATGTAAGAAATAGCTAAAGTGTTTAGGGCAATTTAAGAGAAAAAAAATAAGAAATCCTGAAAATACTTACACTCTCCTTGTTTAATGGATAACACATGGGTTTCTGATTGAGCGATGCTTCCTCTTGCTTTGATCTGAAGACAGAGGGAAATACGTTTATTATCATTTTAAAGGGTAGTCATTAAACTTACATATTTATAATATACAAATAACATATTTATAATTTACAAACAACAAGAATCTTACTACTTCAACCCCAAAGTTACTTTTGTTTACTAAATTTCTCTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCATGGAAAATAAGGAACTTATGTTCATTAAAAGACTGTCAGGTAGTACTTCTAAAACTTTCTGCCAAAGGATCTCTAACAGCAGAGAATGATAACAAAACCTGAGCAGTCTAATGGAGAAGTTCAAAGCAGGTGGCCATTGGCACGATTTCTTGCAAGTCTCTTATTTTATCTGAAAATTCATGAGGAATTCAAAATATATTCTAGGGACTTTCCTGGGGTGTGTGCTGTGTGCTAAATTGCTTCACTCATATCCAACTCTTTGTGACCCTATGGACCATAGCCCACAAGGCTCCTCTGTCCATGGGATTCTCCAGGCATGAATACTGGAGTGGGTTGCCATGCCCTCCTCCAGGGGATCTTTCTGGTCCAGGGATCAAACCCGAATCTCTTACCTGCATTGCAGGTAGATTCTTGATCACTAGCACCACATGGGAAGCCTGGGGTAGAAGAGTGTCTTAAGATTGAAACAATTGGAAAATTCATTGCTATAATTATATCCTCCTTACAG
Seq C2 exon
GTAAATCTGAGCTTCTCCTCAGCCCAAGGCCTCCCAGCCTCAAACACCAGCCTGAAGATCACAGCCGCTCCTTACTCTCTCTGTGGCCTCCGAGCCGTGGACAAGAGTGTCCTACTAATGAAGCCTGAAGCTGAGTTCTCACCTCAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(12.0=100)
A:
NA
C2:
PF077039=A2M_N_2=PD(27.5=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]