MmuINT0130079 @ mm10
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128503473-128506878:-
Coord C1 exon
chr6:128506736-128506878
Coord A exon
chr6:128503623-128506735
Coord C2 exon
chr6:128503473-128503622
Length
3113 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TAATCATGTGCTCTTTACAGGTA
3' ss Score
9.53
Exon sequences
Seq C1 exon
TGAAAGGAGTCTTTTCCCTCCCAATTCAAGTGGAGCCAGGCATGGCTCCCGAGGCTCAGCTGCTCATTTATGCTATTTTACCTAATGAAGAACTTGTCGCTGATGCTCAGAATTTTGAAATCGAGAAGTGTTTTGCCAACAAG
Seq A exon
GTGGGTGTTTGTGTCTAAGCCTGATCCTTTTATTCTCTCCTTTATATGTGTGAGCAATAAAGAAGTACTATCTATTTCTCTTTCTTTCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTTTCTTTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTATGTAGCACTGGCTGTCCAGGAACTTAATATTGACCAGGTTGGTCTAGAACTCACAGAGATCCTCCTGCCTCTGCCTTCCAAGTGTTAGGACTAAAGTCACACCCCTGGCTTAATATTTATTTTAAAACCACAACACAGGACTCTTAAACATTACCCCCAGTATCTCTCAAGTTAGTGAAAAGAGCCATATACACCTTAGCAGTCTAATGGCAGTGCCCAAAGGAGGTGGCCATAGGCAGAGGTCTTTTTCATTTAGAAGATTCATGTGGATTTCAAAATCTATTCTACAACAAACTTTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACACACACACACACAATTGTCTTTTGTTTTGCCTGGATATATGCCTGTGTACCTTGTGTGTGCTTATAAAGGCTAGAAGATGACACAGGATCTCCAGGAACTGAAGTCAGATGGTGTGAACAGCCATGGGTACTGGGAAATGAACCAAGTCCTCTGGAAAAGCGCCCAGTACTATTACTGCTTAACCATCTCTCTGGGCCCCATATCAAACTTTTAAATTATTTTGACACCAAATTTGGCATTGAAAATGCTTTTTCACCAAATGGGTCTGTCTCATGCCACCAATTCCTTAGCAAACCTCCATTCCATACACTGCAAGAGAGTGCACTCCTGTGAGTTTAAAGTTAGCTCCTCAACATAGACAGAAAAGTGTACAGGCCTTTGGTGAGCAAATAAGGATTAAAATATAAAACACTGTCAGTGAGATCTTTTGTTATTTTTAAAGACTCGAAAGCTGTCATGTGAACTCCACTAAGCTATAAACAAGTTTTCCCAAGCAGAATTGGCACTTGTCTGATTTTTTTTAAACTATTCTAGTAGATGAGCTCTGTCAACTTCAGCCACTTTTTTTTTTTCTTCAAAACTATAACTATGAGGATAATGTCTATTTACAGCAAGCGGGCATTTCTGTATTCACATTACATAGTCACATATAGTAAGTGTGCAGCGATCTAAGCAAGAGGACATGGATCCCTGCGTAAATCCTCACTTCCATCTAAGGAGCACTGTTAAAGTTGGGCATTGTGTTCAGAAGCATCATGCTGGTTCCTCTATGAACTTCCTGTTTAGTGAGTCTCCTGCACCAGCCTCCAGGGTCTTCACTCTGAGTTGTGTGTCGTTGTGAGGGGAAATCTTGAGAGAGCCACTCCACTCTAGCAATGGGCAGCAGTCCTTAGCCTGGTGAGTTAGTTTATTTACACTCCAGACATGATGCTATCTGACAGCATATAATTGACAGGGGGAAAAAAAATTACTTTCTACTCAGAATCAATGCCTGACTGAAAATAATCTCTCTGATTCTGGAAATCTCTGTGTAACGGTACAAAAATTCTTGATAGAAGCCAAACTCCATTCAAAGCTATGTTCACTTCAGATCAAACATCCTTTCACTTAACTGTTGACCTAAGGTAGAAGAAAGCACTAACAGTAGCTCAAATGAAGACTGGTGCACCAATCACGAGAAGGCTGGCAGCCATGCAAAGATTTGATACAGTTGCTAATTTACGCCCCTGATCAGATGGTGTGCAAAGAGGAGCCTGAGAAGTGAAAAAAGACTGGGGTCAGGCAGGGACGTGTCTCTTCAATCCAGAATTTTGTTTTCTCAGACAGGGACGTATCTCTTAAATCCAGAATTTTGTTTTCTGTCTTTTATCGGACAAAGAAAACTGTTTTCTATTTTAAAACATCTTTCCTTTAAGACAGTGTGTACACATTAAATATGTATTAGTTTAAATGGTTTTTCTGGCAGCTAGCCCCAAGAATGCCTGTTTGCATATAGTTGAAAGGCAAAGGAGAGATAAGAAGTCAGGCATGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTCAGGCATGGTGGATGCATACCTCTGACTTCAGCCCTCAGTAGGCATCGGAAGGAGTCTGGGTTACACTGTGAGTTCAAAGCCAAGCTGGGATATGTGCAAGGTCCTGTCTCAAATTAATTTAAAAATAAACCAAATGATAAGAAAGAAAACTGGTTTTGAGTGCAGTCGCTCTGTCCCTGCGATGAAGAGCTGACAGGCTATAGCTTCCATCTCTCACTACTGTCACAGACCCCCAATGTGAGATGATTTTCCGTATGACTGAGGTAGAATAAAAGTGGTATATGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCATATGGTGGCTCACAACCATCTGTAATGTGATCTGATGCCCTCTTCTGAAGACAGCTACAGTGTACTTAGATATAATAATAAATAAATCTTTTTTAAAAAGTGGCATATGAAGTTCCTTATCGCTCTCCTTAAGAGTGTTTCCAATACCATACCAGATTCTAGCACAGTGGGATCAAAAGCAATGCAACCTGCTTTCTGCCAGTTACAGAAAGAAAATCAGGTAAGTCAGTGCCATATTTCCAGGTCATTCTGAAGATGTTGAATGGGAAGCTCCTAGGAAAATAACCCTGCTCTAAAATGGCAAAAGAGAAAGAAAGTTTAAAAAACAAAAACAAAAAACAAAACAAAACAAAACAAAAACCTCAGCATTGTCTAGAGGAGAGTGTCAAGACTCTAATTAATACTCTTTTTTTTTTTCCCTAAGATACTGCTATAATCATGTGCTCTTTACAG
Seq C2 exon
GTAAATTTGAGTTTCCCATCAGCACAGAGCCTGCCAGCCTCTGACACCCACCTGAAGGTCAAAGCCGCGCCTCTGTCCCTCTGTGCCCTCACTGCAGTAGACCAGAGTGTGCTGCTACTGAAGCCCGAAGCCAAGCTCTCACCTCAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359:ENSMUST00000112132:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(31.5=100)
A:
NA
C2:
PF077039=A2M_N_2=PD(26.2=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types