GgaINT0103747 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75729696-75730336:-
Coord C1 exon
chr1:75730194-75730336
Coord A exon
chr1:75729846-75730193
Coord C2 exon
chr1:75729696-75729845
Length
348 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ACCTACCTTTGGTTTTGCAGGTC
3' ss Score
10.74
Exon sequences
Seq C1 exon
CTTACGGGATATTTCAGTTGATCTTACCTGTTGAGATGACAATTGCTCCCCTGGCACAGATGCTTGTGTATACCACTTCACCCAGTGGAGAAGTCATTGCTAGTACAGCAGAATTCCAGGTTGAAAGTTGCCTTCTCAATAAA
Seq A exon
GTAAGTAAAAATAAGGGTTTCTGTTTGTCTCATGACCATAAGTTCATTTATTGATTCCATCATGGAGGCAGAGTTCACAATTAGTTACTAAACCTCAGACACTGACAGTCAGTGTCTGAGGTTTAGTAACTAATATTCAGAATAGGTTACAAAGCCATAACTACAAAAGTGAAGGAAAACACAGTACCATAGCTGGTCATCGTGAATCACACTAGTAAAAGCTGAATATGTTAAAAGAGTTGTGGAGCACTAGCAGAACTCAATTCACAAAGCTAGATACTTCAGTATCTAAGAGTGAATAACAGCATCTGGAAAACTGGCTACTTTAACCTACCTTTGGTTTTGCAG
Seq C2 exon
GTCAACTTGAGTTTTGTACCCAAAGAAGAACTTCCTGCTTCCAAGACAATCCTGAAACTCCATTCCTCACCAAGGTCCCTGTGTGCCCTCCGTGCTGTGGACAGGAGCGTTCTCCTCATGAAGCCTGAAGATGAGCTCTCTCCCAGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(31.5=100)
A:
NA
C2:
PF077039=A2M_N_2=PD(26.2=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGATATTTCAGTTGATCTTACCT
R:
AGCTGGGAGAGAGCTCATCTT
Band lengths:
288-636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]