DreINT0000050 @ danRer10
Intron Retention
Gene
ENSDARG00000093199 | A2ML1 (12 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr15:21073105-21073569:-
Coord C1 exon
chr15:21073354-21073569
Coord A exon
chr15:21073255-21073353
Coord C2 exon
chr15:21073105-21073254
Length
99 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TCCGACTGTCATTGTCACAGGTT
3' ss Score
7.72
Exon sequences
Seq C1 exon
GTCTTGTCCAGAGGAGTGATCATTCATCACGGATATGAGAAGGTTGAAGTGAAGTCTTCTTCTAATGGAGTAGCAAGTGGCACAATGTCCTTCAAACTGTCTGTTGGTGCAGATGTGGCTCCTGTAGTGCAGATTCTGGCATACTGTGTTCTCCCTAGTGAAATTGTTATTGCTGGTAGCAGAAAATTGGACGTTGAAAAGTGTTTCAGAAACAAG
Seq A exon
GTATGCATTAAAACACTTTGGTAGGTTTACATTTTCATAGCTATTCAGCTTTTATTTAATATACCACAAAAATGACACATCCGACTGTCATTGTCACAG
Seq C2 exon
GTTTCTCTGCAGTTTTCTCCTGCTAAAGCAGTTCCTGGTGAGAAAAACACTCTCCAGCTCTCAGCTCAGTCTGGTTCACTGTGTGGCCTCAGTGCTGTAGATCAGAGCGTCCTGATCCTCGAGTCAGGAAAACGTCTGAATGCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093199:ENSDART00000154019:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(47.0=100)
A:
NA
C2:
PF077039=A2M_N_2=PD(25.8=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGGCTCCTGTAGTGCA
R:
GAACCAGACTGAGCTGAGAGC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]