BtaINT0007451 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101248252-101249128:+
Coord C1 exon
chr5:101248252-101248480
Coord A exon
chr5:101248481-101249001
Coord C2 exon
chr5:101249002-101249128
Length
521 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TGGGTGGGAATGGGGGACAGGTG
3' ss Score
-0.24
Exon sequences
Seq C1 exon
TATGTGGGGCAAACATGAGTTGGCAATCAAGGTCCCTGACACCATCACGGAGTGGAAGGCCAGTGCCCTCTGCTTGTCTGGAACAGCAGGGCTTGGACTCTCACCCACCATCTCTCTCACAGCCTTCCAGCCCTTCTTCCTGGAACTCACTCTTCCCTATTCTGTGGTTCGAGGAGAAGCCTTCACACTCAAAGCCACTGTGTTCAACTATCTGTCCCATTGCATTCGG
Seq A exon
GTAAGGGCACTTGTCTGGATGTAAGTGAAGCTAGGAGGAAGGAACACACCATGCATTTCCTAAATCTCTCCCAGGTCATCTCCTAGTAAATCATAATTGAATACGATGTGGCCTAATTTTGGACTAGAATAGGTGCTAAGAACAAAGCTCCCCAGCAGATCCAAGGTGGTAAGGTTATAGTCATCCAGGACTGTATTCTGTTTGTGTATTCCTGAATTCAGATATTACTCCCACCTGATTATTTTTTCACTCTAACAAAAGAAAAATATTTCTTCCTTGTGTTGGCACAAGCCTAAATCCTGAGTATTTATCCTGATTCCCATCAGTTTTTCAATGTCCTTATGGCAAACATCTAAACTACAAAATACTGACAGGATTTACCTTGACTGAACAGCTTCTCAAAGCCTCTCATTAGTATGCATTGTCCCTTTAAGCGTCTTTCCCTCCCCCCGCCCTGACACCCCATTACTGACCTTTTCCCTGTGTTCTTTGTCCAACTTGTGGGTGGGAATGGGGGACAG
Seq C2 exon
GTGAGCATACAGCTGGAGGCCTCTTCTGCCTTCTTGGCCATCCCAGTAGAGAAGAATGAAGAATCTCAGTGTGTCTGTGGAAACAAGCAGAGAACCGTGTCCTGGGCTGTGACCCCAAAGTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.5=100)
A:
NA
C2:
PF0020717=A2M=PD(4.4=9.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGGCAAACATGAGTTGG
R:
TGACTTTGGGGTCACAGCC
Band lengths:
350-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]