MmuINT0130082 @ mm9
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128445211-128446146:-
Coord C1 exon
chr6:128445918-128446146
Coord A exon
chr6:128445338-128445917
Coord C2 exon
chr6:128445211-128445337
Length
580 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGTCTGGGTTTGGAAACAGATC
3' ss Score
5.94
Exon sequences
Seq C1 exon
CGTATCCGGGGACGGTGAATTGGCGGTAAAGGTCCCCGACACCATCACTGAGTGGAAGGCCAGTGCATTCTGCTTGTCTGGAACCACTGGCCTTGGCCTCTCCTCCACCATCTCCCTTCAAGCCTTCCAGCCCTTCTTCTTGGAGCTCACTCTCCCATACTCTGTGGTGCGAGGGGAAGCCTTTACCCTCAAAGCCACCGTGCTCAATTACATGTCTCACTGCATTCAG
Seq A exon
GTAAGGGCGCTCCTCTGCAAGTGAATGGAAGCCGCAACACCTCTCATTACCTAGGGGTCCTCAGGCCCCTCCTAATGCTATGTGAGATGTGCTCTGACTTTGGAAGGGAACAAGTACTCAGAGAAAAGTTCCCTGCCAACAAACTATTTTCATTCAGGAGTCTGTAAATGTTGCTAAATTCAGATATTATTTCCTGGTGGTTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGACTCACTGTGCACACAGTCCAGACTGACCTAAAAACTCCCACCTTCCTGCCTCAACTAGCAGTGTGTGGAATTCTACAGTGTGTAGCCATGCCCAACTGACCTACTTCATATGTAAAGCCTGTCTAAAGAAATGCCTCTTCCTCTGTTCACACAGAACTCCCAGGCATTTACACCATTCCTAATAACCCTCAAGTCCCATGTTGCAAACATCTAAACTTCAAAGTATGTGCTGTCGTTTACCCCCTCCTTCTGATTCTTTCTACCTGTCTGGGTTTGGAAACAG
Seq C2 exon
ATCCGAGTGGACCTAGAGATTTCTCCTGATTTCCTGGCAGTCCCAGTGGGGGGCCATGAAAACTCTCATTGCATCTGTGGAAATGAAAGGAAAACCGTGTCCTGGGCTGTGACCCCAAAGTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-Pzp:NM_007376:19
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.5=100)
A:
NA
C2:
PF0020717=A2M=PD(4.4=9.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGTGAATTGGCGGTAAA
R:
CAGCGACTTTGGGGTCACAG
Band lengths:
346-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: