GgaINT0112588 @ galGal4
Intron Retention
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75788199-75789830:-
Coord C1 exon
chr1:75789618-75789830
Coord A exon
chr1:75788323-75789617
Coord C2 exon
chr1:75788199-75788322
Length
1295 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ATTCCTCTTTCTGTTCTCAGATT
3' ss Score
11.56
Exon sequences
Seq C1 exon
AGTGTCTCATACACCATCCCTGACACCATCACTGAATGGAAGGCCAGTGCCTTCTGTGTGGAAGAATTGGCTGGATTTGGTATGTCTGTGCCTGCTACCCTGACAGCCTTCCAGCCTTTCTTTGTGGACTTGACCTTGCCATACTCCATCATTCATGGAGAAGATTTCCTGCTTAGAGCCAATGTCTTTAACTACCTCAATCACTGCATCAAG
Seq A exon
GTAGGTACTTCTGCCCACACTTCTAGTCCCTATCCCACCTCCAAACAATCTGTAGTCTGGAAAAGCAAGCAAATAGACAAACAAACAGTCAAACAAAAAAGAGTATAAAAATGATGGATGTAAATGAAAATGACTGGATCTGTCTCTGCTTGATTGAGGCACTGCTCTTTCTATCTAATGATAGACTGAATTTGTCCTGAACCACTACAAAACAGGAGGAGATCTATGTGAACTGTGTCTGGAATTTGTCTTCCTGAACAACTACAAAACAGGAGGAGGTCTATGTGAACTGTGTCTAAGATGTTTGTACAAACAACTGTCTTCTGAGATCTAAGAAGGAAGGGAACAAGTACTTTGTGGAGTATCATTCACTTTTCAATGTTATGTAAGCCATCACTTTTTATTGGCTTCCTTTTTAAAGGATATGTGAAGTTGTGAAGGAATTAAGTACTTGTACCTCCCAAACAAGCATATGGGAAGAGCAAGAAGTGAAGAACAGAAAAACCTTTGTTCCCTGGGGCAAAAGTTCTCAAAAGTAGGGAGTATCAATGTCTCAATACTTCCCCTATATGGTGTATGTGCAGCTGGAGAATACTGGTCACAGGTAGTGGTTGTCTGTGCTCTCAGTGCTCTGTACTTTCCAGGTGAAATGCCTCTAGACCACTGTATCTCTACACTGAAGGAACTTACACACACTTGAAGAAAGAAAAACAGAGCTCTTTTGTTTGATTTCTTGTTTCTTACACTGTATCCTAAAATGAGAGGCAAGTACAAAGTCTAGATTTCTTTTGCTTAATTTATTTGCTGAAAATCAGCTCTCTGATCTCGAAAGGAGACCATCACAAAAGAAGGAAAAATCAAGACACATCTTTGTAATTTTTTTTCAAACTCTGTTAACAGTTTGACTAGGAAAAAAAAAAAAACAACCCTAAGGCCTTAATCAGCCTATTAAAAAATATATCCATTATTGAGGCTTTCATCTCTTCATCTTGTTCTTCAACAATAACAAAAACATAAGCAAACATTAAATGATAACTTCCTTGCAAGTTAGTTAGATATACGTATAGGATATTTAATATCTCAGTGGAGAATGTCATAAAGAGCAGAAGAGGACACTGCCAAAGTCACATCTGATAGATGATTCATCTGTACACCATTATCCCAGGCCTTCAATCTGCTCTACACTGTTAATACTTGACATAAGTAGAGGTGATCCAGCTGCTCTCTAATAATAAAGCACCATTTTTCTATGGTATAAAATCTTTATTGCACTACATTCCTCTTTCTGTTCTCAG
Seq C2 exon
ATTAATGTTTTGCTGTTAGAATCCCTTGATTATCAAGCAAAACTCATCTCCCCAGAAGATGATGGATGTGTATGCGCCAAGATAAGAAAGTCCTATGTCTGGAATATTTTCCCCAAAGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(77.8=100)
A:
PF0020717=A2M=FE(1.1=100)
C2:
PF0020717=A2M=PD(4.4=9.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCATACACCATCCCTGACA
R:
AGACATAGGACTTTCTTATCTTGGCG
Band lengths:
311-1606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]