HsaINT1037732 @ hg38
Intron Retention
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9554521-9556817:+
Coord C1 exon
chr12:9554521-9554754
Coord A exon
chr12:9554755-9556675
Coord C2 exon
chr12:9556676-9556817
Length
1921 bp
Sequences
Splice sites
5' ss Seq
GAGTTGTTC
5' ss Score
-8.35
3' ss Seq
GGACCAATGATCAATTTAATTTA
3' ss Score
-7.77
Exon sequences
Seq C1 exon
TTCCTCAGGCTCTGCCAATCTTTCGTTCCTCATTCCTGATACGATAACCCAATGGGAGGCAAGTGGCTTTTGTGTGAATGGTGACGTTGGATTTGGCATTTCCTCTACAACCACTCTAGAAGTCTCCCAACCTTTCTTTATTGAGATTGCCTCACCCTTTTCGGTTGTTCAAAATGAACAATTTGATTTGATTGTCAATGTCTTCAGCTACCGGAATACATGTGTAGAGGTGAG
Seq A exon
TTGTTCTGTTTGATCTGGAGGCAAAAATCTAACAAAGCTAAAATATTTCTTAATATTTCCATATTCTCTTTATCCTCAAATGCAAAATGCTACTATAAAGGTGTAAGACTTAGGTCCGTATTCCTCAAACAAATACAATTGCTTTCATTCACAGTGACAGTTTAAACAGTGTATTGAGCATGGTGTTTCATAGTGATGTGTGTTCCAGTGCTATCCTCATTGCCATGATTGTTTTCTTAGATTTCTGTTCAAGTGGAGGAGTCTCAGAATTATGAAGCAAATATTCATACCTTGAAAATCAATGGCAGTGAGGTTATTCAAGCTGGAGGGAGGAAAACAAACGTCTGGACTATTATACCTAAGAAATTGGGTAAGCAGCTATCTGTCTACACCAGTCACTCATGGAAAACCAGCCCATATTTATTGTCTCCATTTACTTTCCTTAAATTGTCTATACAAACGTGATTTTCTCCCTCACATTTTTAAAATTCTTATTGTAAATTCTCCATTAGAAATTCTAATCTATAGTAATCTAATTTCTGGTTGTTAATGCTGTGTAGATCAAAACCACCATTCATTTTTACAAGAGCATAATGTAATTAAAATACAATATAAATGCTAACTGGCATGACCTATCACGGACTATATGTTTGGCATATGCCATATCCCAAACGAAGGCCATGTTATCATTAATGCCACCTTAATTATTTGACTTCTCGCTGGGTCCTTCACCTACCATCATGAACCCAGGCCACCTTCACGAAAATTGCTGCTCCATCACAATGACCAATGAGGGAATTGTCAGGTTTGTAAATTTACTAGATGTGCCATGGGGATACCAAAATCACTAAATGATTGGATTGAGATCAAAAACTGAGAATATTGTCTTAGTGCCTATGCTATCTGCAAGATGGAAAAATAAACTTGTCTCCTATTGAAATATTGAAAATACATGGAATGGAAAAAGTTTAAAACTCTAGTAAACAAGGAATGCTAGATACAATGTGCGTGACACTTTTAATCACTACTTTTAAAAAATGGTCATTCAAATTTTCTTTAATGTACTATATTCATTGTATTATTTTAACAGCAAATAATATATCTATGAGATTATTTTAGCTCAGTTGTGATGCTGTTCTCAGACTATTTTTCTATTAGATTTGAAGTTTCTCAATATTTCTACTGCACAAGATCTTCAAAATCCTACCTTGGCAATTGAGACAGAATATTGTACCAACTTGTATAGTTTTATGACATTAAGTCGAAGACACAGTTTTAAGAGTGAAATAGCAAGCTTCCTGAGACAGAGAAACAATAAAACACAACAACAACAACAACAACAAAAAGAACAATATATTGGTTATGTATATTGGTATATAGTCACGTAAATAATAATAACCTTAAAGAATGATTGTTTTCAATCCTGTAATTTTTACAAGCAAGGAAACTGGAGATCAGTTCTAATTACATAATGTGAAATCAGGAAGTTTAAAAACAATGGATTCCTTGCTAGGACATTATTTCAATCCAGTGCCTATCTACTATATCATATTTTACTATGCTTGCTTGATTTTGGGAAGTTAGGAGCCCTAGTTCGCTGACATTATTAGCCTATATTGTCATAAGTAACCTTTATAAACAATCAATATCAAGAAATTGACTCAGACAACTTTGTAAAATGTTACTTTTCCTAAAATTTCTTAAGTTTTAATTAAGTAAATTTATCATTTAATGTAAGGAATCATGAAAATCATGGAACAGGTGAAATGGAAGATACCACATTATACCTAGGAAGGAGAAGAAATAAGTTATTTTGTTCTAAGCATTAACTTAATGATAGAATTTGGTTAATCCAATTCAAGACATGGTTCACAGACTCTAGTCATTTCTCATTACAGAAGGGACCAATGATCAATTTAAT
Seq C2 exon
TTATATTTGGGAATGTCTTCCAGGTAAAGTGAATATCACTGTAGTTGCTGAGTCCAAACAAAGCAGTGCTTGCCCAAATGAAGGAATGGAGCAGCAAAAGCTAAACTGGAAAGACACTGTGGTCCAAAGCTTCTTAGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776:ENST00000518709:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(86.7=100)
A:
NA
C2:
PF0020717=A2M=PD(2.2=4.2)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCCAATCTTTCGTTCC
R:
TGGACCACAGTGTCTTTCCAG
Band lengths:
352-2273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains