BtaINT0007455 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101255977-101256775:+
Coord C1 exon
chr5:101255977-101256060
Coord A exon
chr5:101256061-101256598
Coord C2 exon
chr5:101256599-101256775
Length
538 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTCTGTATTTCATTCCTCAGGTG
3' ss Score
9.88
Exon sequences
Seq C1 exon
AAACTGGAGGATCTGAAAAGTTGTCATTAAAACTTCCTTCAAATGTGGTTGAAGGTTCTGCCAGGGCGACATATTCAGTTTTGG
Seq A exon
GTGAGTCTCCCATCCCAAAAGAAGCATCTGTCCATCCCTTTAACTCTAGTACATGGGGTCTCATCATCACTTCCTAATGAAGTCCCTGTGTCTAGGCATTGGACTGAGAGAAAGCACCAAGAACCACACTGTGTATTAGTGGGAAAGAGGGGCTGAATCGATGCTGTGCTACATCTTAAACCTTGATATACTCTAAAGAGTAAGGAGAGTCATCTCTTTGTGCTCTCACCTTCAAGATATTGGCTAGATAATGGTGCTTTCTACTAGAGATGAAACTAATCCTTTTTTACCAGATGTGTGACTCATCAGAAAAGTATATCCTGCCATTTTGGTCTTTTACTATTTTTCCCATCTTTGAACATCTACTTTATTGTTCCCACATTTCTCTTTCTATTCTTGTTTTTCTTCACCTCTTATGCTTTCTGATCCTCCCCTTTATACATGATTTGGCTTCTCACTTAGCTAGTCATTTATTTTCCTACCCTAACATCAATCAACTGAGTTCCTCTAAATTTTTTTTCTGTATTTCATTCCTCAG
Seq C2 exon
GTGATATACTAGGCTCTGCAATGCAAAATCTTCAGAATCTTCTCCGGATGCCCTATGGTTGTGGAGAACAGAATATGGTCCTTTTCACCCCTAACATCTACGTTCTGAACTATCTAAATGAGACAGGACAGCTCACTGAGAAGATCAAGTCCAAAGCCATCAGCTACCTCATCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGATCTGAAAAGTTGTCA
R:
CACTGATGAGGTAGCTGATGGC
Band lengths:
259-797
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]