MmuINT0130087 @ mm10
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128491496-128492240:-
Coord C1 exon
chr6:128492157-128492240
Coord A exon
chr6:128491673-128492156
Coord C2 exon
chr6:128491496-128491672
Length
484 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
AATTTCTCTATGTTCCTTAGGTG
3' ss Score
8.33
Exon sequences
Seq C1 exon
ATACTGAGTTACAAGATAATTGGTCACTGGAGCTTCCACCCAATGTGGTTGAAGGATCTGCCAGGGCTACACATTCCGTTTTGG
Seq A exon
GTAAGTCTCTCAGCCCAAGCTATAGCAGCTGTTCCTTGCTGTAATACTGTGTGTGACTAATGATGCCACTAAGCACCAGATGTTAGACTGAGAAAAGGAGCGGCAAGTACAGGGCTACCCTGTGCATGAGTGAGACAATGGGTTGAACTGATACTGTATGCAGCGATGTGCTTTGGTCAACTCTGACAGCTGAGAAGGGCTGTGTTCTCATCTCCCAGTGATCCATGGATGGACAGCATATTCTAGAGGATATGGAAATCATAATTCCATTTTCCCAGACATCATGGCCCATCAGAAAAGATGTCGTCTCTTGCCATTCAGTTTCTTTCCTGCTCGCTGTGTGTCCTGGAGCCATCTGTTTTACTCATTTCTTGTGTAACTTTTTTTTTGTCTTTCCTTCCTTATAACATGGTCTCTTGGTTATATTTTCTTACTACAATACAAGCCATCTCGATATCTCTTTAAATTTCTCTATGTTCCTTAG
Seq C2 exon
GTGATATACTGGGCTCTGCAATGCAAAACCTCCAGAATCTTCTCCAGATGCCCTATGGCTGTGGGGAACAAAACATGGTCCTTTTTGTCCCTAACATCTATGTTCTGAACTATCTGAACGAGACACAGCAGCTGACAGAGGCGATCAAGTCCAAAGCCATTAACTACCTCATCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359:ENSMUST00000112132:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACAAGATAATTGGTCACTGGAGC
R:
CACTGATGAGGTAGTTAATGGCT
Band lengths:
254-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types