MmuALTD1032625-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000059659 | Gm10069
Description
predicted gene 10069 [Source:MGI Symbol;Acc:MGI:3641875]
Coordinates
chr6:128488891-128502363:+
Coord C1 exon
chr6:128488891-128488980
Coord A exon
chr6:128488981-128489023
Coord C2 exon
chr6:128502166-128502363
Length
43 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
3' ss Seq
TCGGCTCTGCTGTGTTTCAGGAG
3' ss Score
8.91
Exon sequences
Seq C1 exon
GGTCTCTCCACAGACCTGAGTGGAGGAGAAGCCCCCGTGGGAGTTTTGTTGCTTGCTGATCCACTTCACAATCTTGGATGCTGTGGACAG
Seq A exon
GTCTGATGAAGACAGGTCCCGTGTGGGCCGGGAAGACTCAGAG
Seq C2 exon
GAGCGATTACCTGAAAAATGCTGTGTGCATCATTATCGCCCAGAGAGTGCTTTGGCGTGTACACGATCCCATTGTGAGTGATGTCTTCTCCGCTGATGCAGTTCTCATGGTCTTTGTACACTGGGACACCAAAGAAGGCACCCTGGACAGTCTTTCCTGGCAGCAAATTGTAGATCTGTGCATTGGAGGAGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059659-9-15,11-15,12-15-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTGAGTGGAGGAGAAGC
R:
TGTACACGCCAAAGCACTCTC
Band lengths:
142-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types