DreINT0140005 @ danRer10
Intron Retention
Gene
ENSDARG00000104200 | si:ch211-285j16.4
Description
si:ch211-285j16.4 [Source:ZFIN;Acc:ZDB-GENE-141219-32]
Coordinates
chr15:17968486-17969608:+
Coord C1 exon
chr15:17968486-17968569
Coord A exon
chr15:17968570-17969431
Coord C2 exon
chr15:17969432-17969608
Length
862 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TCGGGTTCTGTGTTCTGCAGGAG
3' ss Score
8.3
Exon sequences
Seq C1 exon
ACCGTCCATACAACACATCCATCACCCTTGCTCTTCCTAAAGTTTTTGTGAAGGATTCTGCCAAATGCTTCATCACTGTTCTGG
Seq A exon
GTGAGCCTAAAGAATGCTATCAAATGTACAGTTTGTTATGTCCACTTTCACTGCTGTGTTATATACTGTAAATGTATATATAGGACCTGTTTAGGCTACAATAATACTGTATTAAGTTAAAGTTATAATTCTAAGCAGGGTTTACTAGATAATATAAGTTAATACACTTTGCTTTAGAACATATTTTCCTCTTGAATTATGCTTAACTACTGCTCTTTCACACATGTAAATATTGAAAATCACGGAGTTGTTCTCAATGTGTGATCTTCACTATATACTATACAGTTGAAAGCAAAATTATGAACCCACCGGGTGTGAAATCAAATATTTTCAAATATTTCCCGAGTGCTTTTTAATGGAGAAAAGATTTTTTTCAACACATTTTTAAAAGAATAGTTTTTATATTTAATTTCTAATAACTAATTTCTTTGTCTTCGCCATGATGACAGTACATAATATTTTACAAGTTATTTTGCATAAAATTAGTCTTCAGCTTGAAGTGCAATTTAAAGGCCTAACCAAGTTCATTAGTTTAACTAGGCAAGTTAGATTAATTAGGCAATCGACAACAATTGTTCTAAAGCCAAACGAAAATAAATATGTACAATTTGTTAAATGGGCTAATAGTTTTTACATTTAAAACTTAACAGTTTTTACATTTGTTTAAATATGTATTTTTATTCCAGCCAAACTGAAAGAAATATATATTTCTCCAACTGACAAATAAGATAGGTAATACTAAAAATGGGTGAAATTTCGTTGCTCTGAAATGGACATCACTTGAATTTTTCACAGAAAGGCTAATAATTTTGTCTTCAGATATGTTTTTATACTTATATGCTTCGGGTTCTGTGTTCTGCAG
Seq C2 exon
GAGATCTGATGGGTCGTGCTTTGAGAAACATTGGTGATCTTCTGGCTATGCCATACGGCTGTGGAGAGCAGAACATGCTGCAGTTTGCCCCAAATATTTACATCCTTCAATACCTGGAGAGCAGCGGACAGCTCACTCCTGAGATCAGAGCCCGAGCCGTAACCTTCCTACAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104200:ENSDART00000163765:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTCCATACAACACATCCA
R:
GCTCTGTAGGAAGGTTACGGC
Band lengths:
260-1122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]