BtaINT0007461 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101259291-101260753:+
Coord C1 exon
chr5:101259291-101259468
Coord A exon
chr5:101259469-101260529
Coord C2 exon
chr5:101260530-101260753
Length
1061 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TATCCTTTTTTATTTCTAAGAGG
3' ss Score
6.52
Exon sequences
Seq C1 exon
CACTCAATTGTCCGCAATGCTCTCTTCTGCCTGGAAAGGGCCTGGCAATCTGCCTCAGAGGCCCAAGGAAGTTTTGTCTATACCAAGGCGTTATTGGCCTATGCCTTCGCACTAGCAGGAGACCAAGCCAAACGAAACGAACTGCTTGAGTCACTACACAAAGAGGCTGTAAAAGAAG
Seq A exon
GTAAGAATTGACTTCCAAAAATCACCAATGATCAAAGGGAGAGACCCTATTTTATTCACATCTATTTTGGGCTTCCCTGGTAGCTCAGCTGGTAAAGAATCCACCTGCAATGCAGGAGACCCCGGTTCAATTCCTGGGTCAGGAAGATCCCCTGGAGAAGGGATAGGCTACCCACTCCAGTATTCTTGGGCTTCCCTGGTGGCTCAGCTTGTATCTGCCTGCAATGCAGGAGACCTGGGTTCTATCCCTGGTTTGGGAAGATCCACTGGAGAAGGGAATGGCTACCCACTCCAGTGTTCTCACCTGGAGAAATCCATGAACTGTATATAATCAGTCCATGGGGTTGCAGAGTTGGAAATGACTGAACAACTTTCACTTTTCACTTTCACATCATGCTTATATTATATTATATCCATTTTATTATTATAAGAAGATTAATTATTACTGACCTAACATCTCTAGGTAACATGGATGATTTTATCAATTCACACATTACAAGCCTCGAAACAGTCCAGTTTCTAATATCACACAAGGATGTAATAAAGATACGAGGTGATTTACTGGAACCTCAATGTACTTTCTTGGCAAAGATTAGGTTTATTGGTGATTACATAATACTTTCACTTCATGTATGTCTGGGCTTCCCTGATAGCTCAGTTGGTAAAGAATCTGCCCACAATGCAGGAGACCCCGGTTCAATTCCTAGGTCGAGAAGATCCACTGGAGAAAGGAAAGACTACCCACTCTAGTAATCTTGGGCTTCCCTGGAGGCTCAGCTGGTAAAGAATCTGCCTGCAATGCGGGAGACCTGGGTTCAATCCCTGGGGTTGGGGAGATCCCCTGAAGAAAGGAAAGGCTACCGACTCCAGTATTCTCGCCTGGAGAATTCCATGGACTGTATAGTCCATAGGGTCACAAAAAATCAGAAACGACTGAGAGGCTTTCACTTCACTTCATGTATGTCCATTCACTGGGTGAGCTGTAATTACAGGGATCATTCATGAATTAGATTTTTGAAAATGTTCTCTAAGCTGAAGATGATATCCTTTTTTATTTCTAAG
Seq C2 exon
AGGACTCAATCCACTGGCAACGTCCTAGAAAGCCTCAAGAAGTTAATGAACTCTACAGTCCACACCGGGCTCCTTCTGTTGATGTGGAGATGACATCTTACTGCCTCCTTGCCCATCTTACTGCCCAGCCTGCCCCATCTTCAGAAGATCTGTCTGTGGCTACACAGATTGTAAAATGGCTCACCAAGCAACAGAACCCCAATGGCGGCTTCTCCTCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.307
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(23.0=100)
A:
NA
C2:
PF076789=A2M_comp=FE(28.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGGGCCTGGCAATCTG
R:
TTGGGGTTCTGTTGCTTGGTG
Band lengths:
348-1409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]