GgaINT0112597 @ galGal4
Intron Retention
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75781283-75781934:-
Coord C1 exon
chr1:75781769-75781934
Coord A exon
chr1:75781501-75781768
Coord C2 exon
chr1:75781283-75781500
Length
268 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CACCCTCTTCGTTTATTCAGACG
3' ss Score
7.77
Exon sequences
Seq C1 exon
CACACAGTAATCCGAAATGCCTTTTATTGCCTGGAGACTGCATCTGAAAAAAATATCACTGACATTTACACGCAGGCACTTGTGGCCTATGCCTTCTGTTTAGCTGGCAAGGCAGAAATATGTGAATCATTCCTTAGAGAACTACAGAAATCAGCAAAGGAAGTTG
Seq A exon
GTGAGTTTCAGCCATTTCAGGATTTGGGGAGGTGGGAAGATGGAATACATTTTACTGATGGCATGCACCTTGAAAATATTGAGAGTATAGGCACATGAATCAGAAATCACACACCTCCAAGTAATTGCAGAAAAAACTTACAACATGTCTGTTGCTCCACATTAAGTAGTTGTGAGAAAGGCCAGGTTACAGTATGTCTCCGGGACAGCATAGAACAGCAATATCAATATTCCATTCTCATTGCTCTTCACCCTCTTCGTTTATTCAG
Seq C2 exon
ACGGTTCAAAGTACTGGGAGCAGAACCAGAGATCTGCACCTGAAAAATCCCACCTCTTAGACCATGTTCAACCAACTGATGTTGAGATCACCAGCTACGTGCTGTTGGCATTGCTCTACAAACCAAATCGCAGTCAAGAGGATCTCACAAAGGCCTCAGCAATTGTGCAGTGGATTATCAGGCAACAGAATTCCTATGGAGGTTTCGCTTCCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.2=100)
A:
NA
C2:
PF076789=A2M_comp=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGGAGACTGCATCTGAA
R:
GCTGAGGCCTTTGTGAGATCC
Band lengths:
299-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]