BtaINT0007462 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101260530-101262374:+
Coord C1 exon
chr5:101260530-101260753
Coord A exon
chr5:101260754-101262155
Coord C2 exon
chr5:101262156-101262374
Length
1402 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
CTGCACCCATCTTTTTTCAGGAT
3' ss Score
10.72
Exon sequences
Seq C1 exon
AGGACTCAATCCACTGGCAACGTCCTAGAAAGCCTCAAGAAGTTAATGAACTCTACAGTCCACACCGGGCTCCTTCTGTTGATGTGGAGATGACATCTTACTGCCTCCTTGCCCATCTTACTGCCCAGCCTGCCCCATCTTCAGAAGATCTGTCTGTGGCTACACAGATTGTAAAATGGCTCACCAAGCAACAGAACCCCAATGGCGGCTTCTCCTCCACTCAG
Seq A exon
GTCTGTGAAAAGACTCTAGGAAGAAAAATAAATGTACTAATACCTATGTAGACTCAACCATATTCTAAGAGTTGAGTAAGTGAATAGTGTTTCTAATTTATATTTTATTCTTGCATTACCAAAAAGGTTTCAGCCTCATTATTTTACACTTGGATTATTTCTCTGTCCTCTATACAATCTCTCATATTTTCTCTTCTTAGTGGATCCTCTTCTATAAAGTAACCAATCTTCCTAAAGCAGTGTTTTCATATGATTACTTCCTTTAGGGTCTTTCCTGGTGGTCCAGACTCTGTGCTTCCACTGCAGGGGGCTCAGGTTCCATCCCTGGTTGGTGGGGGAACTAAGATCCCACATGCTTTGTGGCATTTTTCATCCAAAGCCTAAAATTAATTTGCCCAAACTATTTCCTCTCCTCGGTAAACATGAATAATCTTGTCTAATAAGGCTGATCTCTTCGCTTTTCCTGAAATTGGCTCACTCTTCTCCAGGTCTTAACTTCCAATATGTCCCTCCCTATTACTGCCTGATGCCTCTTTTCTGTCTGCATAAGTCTTTCTCACTATTCACAGATAATCTTATTTCTCATCTTCTTCACAGCCTTCTCTTATTATGTATACTAGCTCCAACTCCTTCTTTCTCTGAATTTTCCCAACAAATATTGTTATAGAAATGTATATATTACATGTGTCCATGCTCAGTCGTGTCTGACTCTTTGTGACCCCATGGACTGTAGCCCATGAGACTCCTCTGTATTTGGGATTCTCCAGGCAAGAATACTGGAGTAGGTTGCCATTTCCTCCTTCAGGGATCTTCCTGACCCAAGGATCAAACCCAAGTCTCTTGCATCTCCTGCATTGGCAGGCAGATTATTTACCACTCTGCCACCTGTGAAGCTCGTAGAAATACACAGAACTGTATAGATTATTGAAATGTGTTCTACTTTATGTCAACTATTTGAGTCTTAGTCCCATACGTATATTGTAAACTACTTGAATGAGGAAACTGCATTTCCCCAAAGTACCTAAGGGTTTCCAGATGGCTCAAATGGTAAAGAATCTGCCTGCAATGTGGGAGACCTGGAGTCAATCCCTGGGTTGGGAAGATCCCCTGGAGAAAGGAATAGCTATCCACTCCAGTATTCTTGCCTAGAGAATTCCATGGACAGAGAAGCCTTGTGGGCTACAGTCCATAGGATCTCAGGGTAGGACATGATGGAGTGACTAACACACACAAAGAACCTAGAATAGTTCATGATGAATAACGAGCTCTGAATAGACTTGAAATTCAGTGAATGAACAGTGTTTATGACTAGATAACTCTGAGAGTAGCATGGATATGGTTTATATCCAGTATGATTTGGCCACCTTCCTCTCCTATAATTTCTGCACCCATCTTTTTTCAG
Seq C2 exon
GATACAGTGGTGGCTCTTCAGGCACTCTCCAAATATGGAGCAGCAACTTTTATTAAAGGGGAGAAAGCAGCTACTGTCACCGTCAAGTCTGCAGGGACCTTCTCTGAAGAATTCCAAGTAGATGAAGCCAAACGTCTACTGCTGCAGGAGGTGGCTTTGCCAGAGATCCCGGGGAAGTACAGCACAGCCGTGACAGGGTCGGGATGTGTGTACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.307 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(28.9=100)
A:
NA
C2:
PF076789=A2M_comp=PD(5.1=17.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTGCCTCCTTGCCCATCT
R:
ATGTACACACATCCCGACCCT
Band lengths:
342-1744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]