BtaINT0007463 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101262156-101262677:+
Coord C1 exon
chr5:101262156-101262374
Coord A exon
chr5:101262375-101262546
Coord C2 exon
chr5:101262547-101262677
Length
172 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTTCTCCCCATTCGTTTTAGACA
3' ss Score
9.08
Exon sequences
Seq C1 exon
GATACAGTGGTGGCTCTTCAGGCACTCTCCAAATATGGAGCAGCAACTTTTATTAAAGGGGAGAAAGCAGCTACTGTCACCGTCAAGTCTGCAGGGACCTTCTCTGAAGAATTCCAAGTAGATGAAGCCAAACGTCTACTGCTGCAGGAGGTGGCTTTGCCAGAGATCCCGGGGAAGTACAGCACAGCCGTGACAGGGTCGGGATGTGTGTACATCCAG
Seq A exon
GTGAGACTTGCCAGGGTTCCAGAAGTGTCACAAATGGGAGATCAAGTCTCAAGAAGTAGATCTGAAGTCCAAAACAGAGAAAGAAACGTGTACCAAGGGGAAATATAAATTACCTAGAAGCAATAGATTGAGTGCAAAAATAAAGGCTTTTTTTTCTCCCCATTCGTTTTAG
Seq C2 exon
ACATCCTTGAGATATAATATCCTACCCAAGAAAGAAGGAAAAGCTCCCTTTACTCTGAAAGTTGAAACTCTCCCCAAAAACTGTGATGGAGTCAGCACTCACAGGAAAGTCCAGATTCACGTCAATATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.1=17.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTCTGCAGGGACCTTCT
R:
TGGACTTTCCTGTGAGTGCTG
Band lengths:
250-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]