BtaINT0007467 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101265230-101266156:+
Coord C1 exon
chr5:101265230-101265332
Coord A exon
chr5:101265333-101266114
Coord C2 exon
chr5:101266115-101266156
Length
782 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCATTCTTTTTGCATTTCAGAGG
3' ss Score
9.22
Exon sequences
Seq C1 exon
CTGACCCATCATATCCTGAGTTTCTTCTTCTCAGTGGAACAAGACATCGCAGTAAAGAATTTAAAACCAGCCACTATAAAGGCATATGATTACTATGAGACAG
Seq A exon
GTGAGTCAGAGTCAGACATGCCAAGCCTTGAAAGGAAAAAGATGACTAACCTAGGATAGTGTCACCATAACTGAAAGAAAACTCCACAATCTCTCACTGGAAGAAAGAGTGAGTTTATGATCACAGGATAATCTTATTCGTAATACTTGTCCCCAAACAAGTATTAGAGTCATTCTTATAAACTGATCATAAAGCAATAAGGGGATCAGTTCTTTCTAAATTCTCCTATGAAGTTGTTTGTTCTACACTGAATTATTCTAGAAAGGAAAGAAAAGCAGCAATAACTTAAAAAAAAATACTTCTCAGTACTAATGTGTGCTATGAGACCCAAAATTTGATCTATTTTTCACCTGGGCCTTGAAGAGTCACAAATTTGGGGAAACTGTGTAATATATCAGGAAATTCTTTGATTTGCTCATGACTCTGAACTAGAAACTTACCAGCATCTTAGCATGCTGGTGGTGTTCCAACTTAACTCTTTCTTAGAAAAGAAAAGGTTCACAGCAGAAGGTACAACTCCAATAAGAAAAACGAAAAAGAGCTATACAGTGTCCTACAGAAAGACAGTTATCCATTTGTGAACTTTGTATCCAAGCCCAACTTTCTGTTACTTCCCACCAAACAATCCCAAGTAGCTTAGTACAAAAGAAGTCCTTTTATTGGCTCTATAACTATGCTTTATACTTTCTTTCATAACTTACACAATTTATTTACAGTTAACTACTCATGTGCCTATTACTGCATGTCTGTCTTCACTCTGTCTCATTCTTTTTGCATTTCAG
Seq C2 exon
AGGAATTCACCATTGAAGAGTACAGTGTTCCCTGCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.6=100)
A:
NA
C2:
PF076779=A2M_recep=PD(8.0=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]