MmuINT0130098 @ mm10
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128484864-128485660:-
Coord C1 exon
chr6:128485558-128485660
Coord A exon
chr6:128484906-128485557
Coord C2 exon
chr6:128484864-128484905
Length
652 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CAATCATTTCTGTGTTCTAGATG
3' ss Score
9.68
Exon sequences
Seq C1 exon
CTAACCAATCAAACCCTCGGTTTCTCCTTCGCGGTGGAACAAGACATCCCAGTAAAGAACTTAAAACCAGCCCCCATAAAAGTCTATGATTATTATGAGACAG
Seq A exon
GTGAGTGGAATCCAGGCACGCTGAGTTTTGATAGGAGACACTGCCTAGTTTAATGAAAAAGTTACCTTAAACAAAACACCACAACTTTTCACCAGGAAAAAAGTGAGTCTATGGTCACTTATAATTATGTTTTTGTATATTGATCTCTTGGGAGCACCTTAAACAAGCCTTAGGGCCATTCTGATGAAGACATCATGGGAAAATTGGTCATGAGTTCTAAAATTTTCCTTTAAAGTGGCTTGCTCAGAGCTGGATTATTCTAGAAAGGTAGAATAGCAATATTTTTTTAAGATCACATCTTGCTACGGATATGTGACATAAAACCTACCATTTGATCTATTTTTTTTTTATGTGCTGTAGATAATCTCCCCAATGGGGTTGGGGGACAGTACATAGTAGGAAATTCTTCCCTTTAGCCCCAACTCTGAACTTGATTACGCTATGCTAACAGTGTTAACGATGTCTCCTCCTTATCTGAGCACATACAATGAGCACACAGTCAGAGCAAGTCTGGAGTCTACTCCTCGCTTCTGTGCCTCAGCCCTGGGTCTCTTAGGCCCCACCCCCAATCAAAATAACTTAAGTCTAGCCTGTATTTTCAGGGGTTTTCCCACAATTAACCACTTTCTGCTCAATCATTTCTGTGTTCTAG
Seq C2 exon
ATGAATTCACCGTTGAAGAATACAGTGCCCCTTTCAGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359:ENSMUST00000112132:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.6=100)
A:
NA
C2:
PF076779=A2M_recep=PD(8.0=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types