DreINT0140017 @ danRer10
Intron Retention
Gene
ENSDARG00000104200 | si:ch211-285j16.4
Description
si:ch211-285j16.4 [Source:ZFIN;Acc:ZDB-GENE-141219-32]
Coordinates
chr15:17986728-17987153:+
Coord C1 exon
chr15:17986728-17986833
Coord A exon
chr15:17986834-17987104
Coord C2 exon
chr15:17987105-17987153
Length
271 bp
Sequences
Splice sites
5' ss Seq
CCAGTATGT
5' ss Score
5.8
3' ss Seq
TTTTGTTTATCTTCCTTTAGGTG
3' ss Score
11.78
Exon sequences
Seq C1 exon
CTGAAAAAGAAGCAGGTGAAGTCCATCAATCTGAGGCTTCAGCAGGACGTCCTGGTGCAGAAGCTTAAACCAGCTGTGGTGGAGGTCTATGACTACTACAAGACCA
Seq A exon
GTATGTGTCCATTTATCTCTCTGAATCTGCTCAAAGGATAATGGTTTTTATTATAAACCCTGTAAAATAATAATAATAATAATAATAATAATAATAATAATAATATATTAATAATTATAAAAATTAAATGCTATTACCATTGAAATGTTACAATTTTATATAGAAACCTTAGTGACACAAGTGTAGCATAATTGTGTTTGTAAGCCTGTGTTTAATATATGACATTTTCACTTTATTGAGACAAGCGAAAATTTTGTTTATCTTCCTTTAG
Seq C2 exon
GTGAAATGTCTGTGACTGACTACACTTCATCTTGTAAATCAATTGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104200:ENSDART00000163765:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCAGGTGAAGTCCATCA
R:
TGAGCAATTGATTTACAAGATGAAGT
Band lengths:
148-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]