BtaINT0007468 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101266115-101266954:+
Coord C1 exon
chr5:101266115-101266156
Coord A exon
chr5:101266157-101266788
Coord C2 exon
chr5:101266789-101266954
Length
632 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
3' ss Seq
ATCTTTTCTTTACTGTTTAGAAT
3' ss Score
8.34
Exon sequences
Seq C1 exon
AGGAATTCACCATTGAAGAGTACAGTGTTCCCTGCAGTGCTG
Seq A exon
GTAAAGTATAGACAGTAAAATCTGATGCCAATGAAAAGAAAATAAATAAGCATTTGTTGTTTGAGTAAAGCTGCTTCTTGAGCATTCCCTTACCATATTGTAAAACTCCTTGGTGAATCATTTATGAATTGAACTATCTCAGATGTATTATAGACTTTCACAGTAGGAAAAAATGTAAGTAAAATATAATTACATGTATCTAGGTTGACTTGTTTGAGGATGAATCACATATTTGCCACATATAAAAGCTAAATCATTTAATATTTAGTTTACATTTCGGTGCTCAGTGGTGATATATTTATCACCCATGGCCTTTCTGAGATGTTTCTAAACTTACACAAGTTAAAGTCAGGCAACTTTTCACTCTAAAATTGTCCATATAATACTGCACAAGAGATGTGATCTATAAGATGTTCCTTTTGGCTGATTGACAGGGTTCATCTTGACAATACAACACTTGCTATGGGACTTTCCACTCTCCACATTAAAACATGGAAAAACTGAGAACAGCCTTATCAATAAAAATAAATAAGCATACTAAGTTCAAATATTTATCATTAAAATATGAAAAATTATTCATTTATTAGATCACAAAATTTTCCTAATATTTCTATCTTTTCTTTACTGTTTAG
Seq C2 exon
AATCTGAACATGGAAATGATTGAAGATGGTAACTTGTGGACCTCATCAGATGAACTGCTCCAGAAACAAAGAACAAAGACTTATTAGAAGATAGGCCAGTGGGAGAAAGAAGGGACAGGAATTGGAAGTATGCTAAATTTGTATGTTGAATAAATTTATGACATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461:ENSBTAT00000037743:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(8.0=46.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATTCACCATTGAAGAGTACAGT
R:
AAATTTAGCATACTTCCAATTCCTGT
Band lengths:
182-814
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]