MmuINT0130099 @ mm9
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128433585-128434923:-
Coord C1 exon
chr6:128434882-128434923
Coord A exon
chr6:128433745-128434881
Coord C2 exon
chr6:128433585-128433744
Length
1137 bp
Sequences
Splice sites
5' ss Seq
ATGGTACAG
5' ss Score
3.5
3' ss Seq
CTAACTATTCTTCTATTTAGGCT
3' ss Score
7.72
Exon sequences
Seq C1 exon
ATGAATTCACCGTTGAAGAATACAGTGCCCCTTTCAGTGATG
Seq A exon
GTACAGTATGCTCGAATCTAACGCCAAGTTAAACACAGCAAATGAGTACCTGCTTGAGTCTCCATACTAGACTGTTTTTATAGCTTAATGTTTTGTATTATTAATTGGACTGTATCAGATACACTGTAGAATTTAACAGAAAAACAAATGCTAGTGAATTATAATTACTAGTACCGGAGTAATTTGTTTTTCATTAAATTTATGAATTTGAGAGATGTATTTGAGAGAGAACATGAAGTTGGATAGAGAGGAAGGTGGAAAGGACCTGGGAGGAGTTGGAGAGGAGAAAGAATATGGCCAAAATACATAAAATTCTTCAAATGAAGAACTATATATATATATATATATATATATATATATATATATATATATATATATCTTCATAAATTATATATATATATATATAATTTGTGACACATAAAAATTAAATCATCTTCCCAGCACTTGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCGGGGCTAAAAGAGAAACCCTTTCTCAAAAAACAAAAAACAAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCTGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTATTTATATATAATAAATAAATAAATCTTGGGGAAAAAAAAAGAAAGAAATGAGAGAGGGGCTGAAGAGACTTTAAAAACAAAAAACAAAAAAATTAAGTCATCTAATGTTTACATTCTATTAACACACATTTTTCTAAGACACTTAAATGTACACTGGATAAGTTCAATGTCACTGCATTTAGCCACACGGCACAGCAGGGCAGGTCTCATACATAAGACATTCCTTTAGATTGATTGACAGGGTCACTCTTTCACAACCAATCATTTTCCACAATACCTTTGGTTCTCATTTTTAAACTTTGAAGAAAATCTGAGAACTGTTTTGTTGTTAAAGACAGTTAAAATTAAAGGTTTATAATTGAATATTAAAATTAGTTCTTTCAGTAGGTGTGCAACTCCCCTTGATATTTCTAACTATTCTTCTATTTAG
Seq C2 exon
GCTCTGAACAAGGAAATGCTTAAAAGTCGGAACCTATAGATGTCCTCAGAAGGACTCCTCCACACATGAAGAACCAAGAAGAAAGACAGCAAGATAAACGGAAGGGAATTAAAAAACCATAACATTTATATGTTGAATAAAGTTATGACATTTACATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-Pzp:NM_007376:35
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=NA C2=0.636
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(8.0=46.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: