BtaINT0007503 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N633]
Coordinates
chr6:85645295-85646132:-
Coord C1 exon
chr6:85646043-85646132
Coord A exon
chr6:85645444-85646042
Coord C2 exon
chr6:85645295-85645443
Length
599 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TTTTTCTTGTTTTCTTCTAGAAT
3' ss Score
11.78
Exon sequences
Seq C1 exon
GTTTGCAATGCTCCATATGCATTATCTGGCTTGGTGACTGATACAATGCTATGTGCTGGATTTATGTCAGGAGAAGTAGATGCCTGTCAG
Seq A exon
GTACTTTTAGATACATTATCAAATCATTTTTCCCAAGTACTAATTCATTGGAAGTTTTTACCACTTTTTTTTTTTTTTTTTTGTCTTAATGATTTTCACAGAGTAGCTTCTTATTTCAATCCACCTAACAAATATTTATTCATCTCATTAATGTACCAGACCCCAGCTAAGAAGCTGGAAATGCAGTGGTGAACACAACTCTGCTCTCAGGAAGTTTTCAGTCTAGGAATCCATAGTTACAAGGTAATAAAATAAATTTGGCCCTATTTTCTGGGCAACCTGCAGACCTAGGAGGCTGCCTCTTCCTTATCCAGAGATGCCACTTGCACATGTCATCCATTCCACAGAGGCTTCATCATGGAGTCACTTTTGCCATTGTTAAGGTCAACTTCTAGTCTTCCCAGCCCAATCCAATCCCATTGTAGGCACTGTGTTCTGGTTTGTAATTGCCCTGGGTTTTGAAGAAACTCAGTAGTTCCACAGTTCTAAGCCCAAAGAGCATGAATTGTCTGCACTGCCTAGAGCCTATTGAAAACTCCAGAGGAGAGACAGAAATGTTTCAGGACAAGAAACATTTTTTTTTTCTTGTTTTCTTCTAG
Seq C2 exon
AATGATTCTGGTGGACCACTAGCTTACTCCAACTCTAGGAACATCTGGCACCTTGTTCGAATAGTAAGCGCGGGAGAAGGGTGTGGTAAAAAGAATAAACCAGGTGTCTACACTCGAGTGACTGCTTATCATGACTGGATTACCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038520:ENSBTAT00000054325:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(21.1=92.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCAATGCTCCATATGCA
R:
ATCCAGTCATGATAAGCAGTCACT
Band lengths:
230-829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]